<div>Hi,</div>
<div> </div>
<div>I think g_covar can calculate the average structure (take a look to the manual). However note that average structure could be a non relevant structure, i.e. the average could represent an imposible conformation. So maybe you can also give a try to g_cluster and look for the central conformation. Good look.</div>
<div> </div>
<div>Daniel<br><br></div>
<div class="gmail_quote">2011/3/3 <a href="mailto:ajaniharesh@gmail.com">ajaniharesh@gmail.com</a> <span dir="ltr"><<a href="mailto:ajaniharesh@gmail.com">ajaniharesh@gmail.com</a>></span><br>
<blockquote style="BORDER-LEFT: #ccc 1px solid; MARGIN: 0px 0px 0px 0.8ex; PADDING-LEFT: 1ex" class="gmail_quote">Hi everybody,<br><br>I am new user of gromacs. I had run simulation for 1ns and have obtained all required output files. After comparing and analysing the potential energy and rms .<br>
<br>Now i want to know how to find out the average protein structure between 1ps to 1000ps.<br><br>Please help me.<br><br>With regards.<br><br>Sent from my Nokia phone<br><font color="#888888">--<br>gmx-users mailing list <a href="mailto:gmx-users@gromacs.org">gmx-users@gromacs.org</a><br>
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