<br><br><div class="gmail_quote">On Mon, Mar 7, 2011 at 10:45 PM, Justin A. Lemkul <span dir="ltr"><<a href="mailto:jalemkul@vt.edu">jalemkul@vt.edu</a>></span> wrote:<br><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
<div><div></div><div class="h5"><br><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
I'm guessing you have different chain identifiers, i.e. identical<br>
chains, just labeled A and B or something?<br>
<br>
<br>
I got four chains. and the .pdb from trjconv do not distinguish those things and don't show chain info.<br>
<br>
Do you have some nice way to view .gro in pymol. (compare VMD I am a bit familiar with pymol)<br>
<br>
</blockquote>
<br></div></div>
Renumber using genconf. You should be able to select consecutive residues in this way. Otherwise, use a couple quick text editor tricks to write in chain identifiers to make selection easy.<br></blockquote><div><br>genconf works so perfect here.<br>
<br>Thanks again!<br><br>lina<br><br> </div><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
<br>
-Justin<br>
<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
Thanks again,<br>
<br>
lina<br>
<br>
</blockquote><div class="im">
<br>
-- <br>
========================================<br>
<br>
Justin A. Lemkul<br>
Ph.D. Candidate<br>
ICTAS Doctoral Scholar<br>
MILES-IGERT Trainee<br>
Department of Biochemistry<br>
Virginia Tech<br>
Blacksburg, VA<br></div><div><div></div><div class="h5">
jalemkul[at]<a href="http://vt.edu" target="_blank">vt.edu</a> | (540) 231-9080<br>
<a href="http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin" target="_blank">http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin</a><br>
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