Hi,<br><br>after added ions, I got a solv_ions.gro.<br><br>I use trjconv<br><br>to produce the solv_ions.pdb<br><br>when I view it in pymol.<br><br>I showed sequence,<br>it like <br><br> 1 2 3 4 6<br>ODOAOEOROHODOGOOYE<br>
<br>But the solv_ions.pdb looks pretty regular. <br><br>my problem is that,<br><br>how could I choose the protein parts.<br><br>I tried the select protein, resi 1-48 <br>some waters are inclusive.<br><br>Thanks for any suggestion. <br>
<br>lina<br>