dear mohana,<br><br>please refer to this <a href="http://wwwuser.gwdg.de/%7Eggroenh/membed.html">page</a>, to this <a href="http://onlinelibrary.wiley.com/doi/10.1002/jcc.21507/pdf">article</a> (g_membed: Efficient Insertion of a Membrane Protein into an Equilibrated Lipid Bilayer with Minimal Perturbation) or to this <a href="http://wwwuser.gwdg.de/%7Eggroenh/submitted/Membed_rev.pdf">manual</a>, that apparently compiles both the page and the article.<br>
<br>good luck,<br clear="all"> Igor Marques<br>
<br><br><div class="gmail_quote">On Wed, Mar 16, 2011 at 4:51 AM, Mohana lakshmi <span dir="ltr"><<a href="mailto:mohanaa87@yahoo.in">mohanaa87@yahoo.in</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;">
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td style="font:inherit" valign="top">Dear all..<br><br>I am using g_membed tools to embed the protein into lipid membrane. I read that before doing g_membed we need to run a short run with some options in .mdp files. <br>
what are the steps do we need to do before g_membed. It is given that box size should be taken from the membrane strucuture file but i don t know how and where to mention the size?<br>Whether any tutorial is available for transmembrane protein using g_membed tool?<br>
<br>Thank you<br><br>Mohanalakshmi N.<br></td></tr></tbody></table><br><br>--<br>
gmx-users mailing list <a href="mailto:gmx-users@gromacs.org">gmx-users@gromacs.org</a><br>
<a href="http://lists.gromacs.org/mailman/listinfo/gmx-users" target="_blank">http://lists.gromacs.org/mailman/listinfo/gmx-users</a><br>
Please search the archive at <a href="http://www.gromacs.org/Support/Mailing_Lists/Search" target="_blank">http://www.gromacs.org/Support/Mailing_Lists/Search</a> before posting!<br>
Please don't post (un)subscribe requests to the list. Use the<br>
www interface or send it to <a href="mailto:gmx-users-request@gromacs.org">gmx-users-request@gromacs.org</a>.<br>
Can't post? Read <a href="http://www.gromacs.org/Support/Mailing_Lists" target="_blank">http://www.gromacs.org/Support/Mailing_Lists</a><br></blockquote></div><br>