Dear All<br><br><br>I have a trajectory(.xtc) and its corresponding .tpr file:<br>I used the following commands separately but the results were different,Why??<br><br>g_rms -f trajectory.xtc -s structure.tpr -n index.ndx -o rms.xvg<br>
I choosed group number 12 (drug in pulling problem) for two choose<br><br>g_rmsdist -f trajectory.xtc -s structure.tpr -o rmsdist.xvg<br>I choosed the group number 12 <br><br>Since I didn't determine the reference for g_rms ,I expect the same results,because both of them choose the tpr structure as the reference one.<br>
Am I right?<br><br>Thanks in advance<br><br><br>
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