Hi,<div><br></div><div>this question has been answered often. Please check the archive before posting.</div><div><br></div><div>Roland<br><br><div class="gmail_quote">On Thu, Mar 31, 2011 at 8:01 PM, parichita parichita <span dir="ltr"><<a href="mailto:parichitamajumdar@yahoo.co.in">parichitamajumdar@yahoo.co.in</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;"><table cellspacing="0" cellpadding="0" border="0"><tbody><tr><td valign="top" style="font:inherit">Hi...<br>I am try to istalling gromacs -4.5.3 on AMD phenom II.<br>
I am following the installtions protocols, 1 St i have installed the fftw3.2.2,<br>./configure --enable-threads --enables-floats --enables-sse<br>make <br>make install<br><br>then I am doing the "cmake". <br>cd gromacs-4.5.3<br>
mkdir exec<br>cd exec<br>cmake ../<br><br>After cmake the make -j 6 gives me an error<br><br>"<span style="color:rgb(0, 0, 255)">Linking C shared library libmd.so</span><br style="color:rgb(0, 0, 255)"><span style="color:rgb(0, 0, 255)">/usr/bin/ld: /usr/local/lib/libfftw3f.a(tensor.o): relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a shared object; recompile with -fPIC</span><br style="color:rgb(0, 0, 255)">
<span style="color:rgb(0, 0, 255)">/usr/local/lib/libfftw3f.a: could not read symbols: Bad value</span><br style="color:rgb(0, 0, 255)"><span style="color:rgb(0, 0, 255)">collect2: ld returned 1 exit status</span><br style="color:rgb(0, 0, 255)">
<span style="color:rgb(0, 0, 255)">make[2]: *** [src/mdlib/libmd.so.6] Error 1</span><br style="color:rgb(0, 0, 255)"><span style="color:rgb(0, 0, 255)">make[1]: *** [src/mdlib/CMakeFiles/md.dir/all] Error 2</span><br style="color:rgb(0, 0, 255)">
<span style="color:rgb(0, 0, 255)">make: *** [all] Error 2</span>"<br><br>please suggest me what I should do next...<br><br>with regards<br><font color="#888888"><br><br><div style="color:rgb(0, 0, 127)"><div><font face="arial">Parichita Mazumder <br>
Research Fellow <br>C/O Dr. Chaitali Mukhopadhayay <br>Department of Chemistry <br>University of Calcutta <br>92,A P C Road <br>Kolkata-700009 <br>India.</font></div></div></font></td></tr></tbody></table><br>--<br>
gmx-users mailing list <a href="mailto:gmx-users@gromacs.org">gmx-users@gromacs.org</a><br>
<a href="http://lists.gromacs.org/mailman/listinfo/gmx-users" target="_blank">http://lists.gromacs.org/mailman/listinfo/gmx-users</a><br>
Please search the archive at <a href="http://www.gromacs.org/Support/Mailing_Lists/Search" target="_blank">http://www.gromacs.org/Support/Mailing_Lists/Search</a> before posting!<br>
Please don't post (un)subscribe requests to the list. Use the<br>
www interface or send it to <a href="mailto:gmx-users-request@gromacs.org">gmx-users-request@gromacs.org</a>.<br>
Can't post? Read <a href="http://www.gromacs.org/Support/Mailing_Lists" target="_blank">http://www.gromacs.org/Support/Mailing_Lists</a><br></blockquote></div><br><br clear="all"><br>-- <br>ORNL/UT Center for Molecular Biophysics <a href="http://cmb.ornl.gov">cmb.ornl.gov</a><br>
865-241-1537, ORNL PO BOX 2008 MS6309<br>
</div>