<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
<html>
<head>
<meta content="text/html; charset=ISO-8859-1"
http-equiv="Content-Type">
</head>
<body text="#000000" bgcolor="#ffffff">
On 1/04/2011 11:01 AM, parichita parichita wrote:
<blockquote cite="mid:33556.81762.qm@web137409.mail.in.yahoo.com"
type="cite">
<table border="0" cellpadding="0" cellspacing="0">
<tbody>
<tr>
<td style="font: inherit;" valign="top">Hi...<br>
I am try to istalling gromacs -4.5.3 on AMD phenom II.<br>
I am following the installtions protocols, 1 St i have
installed the fftw3.2.2,<br>
./configure --enable-threads --enables-floats
--enables-sse<br>
</td>
</tr>
</tbody>
</table>
</blockquote>
<br>
That's not how you successfully configured FFTW. Two of your flags
do not work, for three separate uses of wrong words.<br>
<br>
<blockquote cite="mid:33556.81762.qm@web137409.mail.in.yahoo.com"
type="cite">
<table border="0" cellpadding="0" cellspacing="0">
<tbody>
<tr>
<td style="font: inherit;" valign="top">make <br>
make install<br>
<br>
then I am doing the "cmake". <br>
cd gromacs-4.5.3<br>
mkdir exec<br>
cd exec<br>
cmake ../<br>
<br>
After cmake the make -j 6 gives me an error<br>
<br>
"<span style="color: rgb(0, 0, 255);">Linking C shared
library libmd.so</span><br style="color: rgb(0, 0,
255);">
<span style="color: rgb(0, 0, 255);">/usr/bin/ld:
/usr/local/lib/libfftw3f.a(tensor.o): relocation
R_X86_64_32 against `.rodata.str1.1' can not be used
when making a shared object; recompile with -fPIC</span><br
style="color: rgb(0, 0, 255);">
</td>
</tr>
</tbody>
</table>
</blockquote>
<br>
I have updated the
<a class="moz-txt-link-freetext" href="http://www.gromacs.org/Downloads/Installation_Instructions">http://www.gromacs.org/Downloads/Installation_Instructions</a> to cover
this issue.<br>
<br>
Mark<br>
<br>
<blockquote cite="mid:33556.81762.qm@web137409.mail.in.yahoo.com"
type="cite">
<table border="0" cellpadding="0" cellspacing="0">
<tbody>
<tr>
<td style="font: inherit;" valign="top"><span style="color:
rgb(0, 0, 255);">/usr/local/lib/libfftw3f.a: could not
read symbols: Bad value</span><br style="color: rgb(0,
0, 255);">
<span style="color: rgb(0, 0, 255);">collect2: ld returned
1 exit status</span><br style="color: rgb(0, 0, 255);">
<span style="color: rgb(0, 0, 255);">make[2]: ***
[src/mdlib/libmd.so.6] Error 1</span><br style="color:
rgb(0, 0, 255);">
<span style="color: rgb(0, 0, 255);">make[1]: ***
[src/mdlib/CMakeFiles/md.dir/all] Error 2</span><br
style="color: rgb(0, 0, 255);">
<span style="color: rgb(0, 0, 255);">make: *** [all] Error
2</span>"<br>
<br>
please suggest me what I should do next...<br>
<br>
with regards<br>
<br>
<br>
<div style="color: rgb(0, 0, 127);">
<div><font face="arial">Parichita Mazumder <br>
Research Fellow <br>
C/O Dr. Chaitali Mukhopadhayay <br>
Department of Chemistry <br>
University of Calcutta <br>
92,A P C Road <br>
Kolkata-700009 <br>
India.</font></div>
</div>
</td>
</tr>
</tbody>
</table>
</blockquote>
<br>
</body>
</html>