I would like to calculate the bindings that occur at the same time during my md trajectory.<br><br>i.e.
The binding between an atom of a residue of the protein and water
molecule and the binding between the same water molecule with another
atom of a residue of the DNA.<br>
<br>I need to also identify which atoms are involved in the formation of these salt bridge during my trajectory. <br><br>I tried to use g_saltbr command, but I think that doesn't do to my case and I didn't understand very well the output generated.<br>
<br>Thanks,<br><br>Caterina