<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
<html>
<head>
<meta content="text/html; charset=ISO-8859-1"
http-equiv="Content-Type">
</head>
<body text="#000000" bgcolor="#ffffff">
On 13/04/2011 3:38 AM, Miguel Quiliano Meza wrote:
<blockquote
cite="mid:BANLkTim4Sc3kyD=PYzDPHWvBthKPLnUdfA@mail.gmail.com"
type="cite">Hi everyone.<br>
<br>
I followed the steps in <a moz-do-not-send="true"
href="http://www.gromacs.org/Downloads/Installation_Instructions#Prerequisites"
target="_blank">http://www.gromacs.org/Downloads/Installation_Instructions#Prerequisites</a>
for my problem, but I obtained problems at the moment to perform
"make".<br>
<br>
So, as mention the web page of gromacs... <br>
<br>
<span style="background-color: rgb(255, 255, 0);">If you get
errors during GROMACS compilation (the "make" step) that suggest
that you "recompile with -fPIC," then you should return to this
FFTW stage and configure with </span><code
style="background-color: rgb(255, 255, 0);">--enable-shared</code><span
style="background-color: rgb(255, 255, 0);"> or </span><code
style="background-color: rgb(255, 255, 0);">--with-pic</code><span
style="background-color: rgb(255, 255, 0);">.</span><br>
<br>
By the way, previously I performed "make" with FFTW version 3.2.2
(default version in rocks cluster 5.4)<br>
<br>
I did:<br>
<br>
root@bioinfocluster fftw-3.2.2]# ./configure --enable-threads
--prefix=/share/apps/opt/fftw
<div>
<br>
Without errors, and then:<br>
</div>
<div><br>
</div>
<div>[root@bioinfocluster fftw-3.2.2]# make</div>
<div><br>
</div>
<div>make[3]: Leaving directory `/share/apps/src/fftw-3.2.2/tools'</div>
<div>make[2]: Leaving directory `/share/apps/src/fftw-3.2.2/tools'</div>
<div>Making all in m4</div>
<div>make[2]: Entering directory `/share/apps/src/fftw-3.2.2/m4'</div>
<div>make[2]: Nothing to be done for `all'.</div>
<div>make[2]: Leaving directory `/share/apps/src/fftw-3.2.2/m4'</div>
<div>make[1]: Leaving directory `/share/apps/src/fftw-3.2.2'</div>
<div><br>
What could be the problem? please advices.<br>
</div>
</blockquote>
<br>
The problem is probably that you haven't configured FFTW with
--enable-shared. Go back to that step, run "make distclean" and try
to configure again.<br>
<br>
Mark<br>
</body>
</html>