Reduicng no. of frames means breaking the simulation into smaller frames ... will it affect the result ??<br><br><div class="gmail_quote">On Thu, Apr 14, 2011 at 10:06 PM, Mark Abraham <span dir="ltr"><<a href="mailto:Mark.Abraham@anu.edu.au">Mark.Abraham@anu.edu.au</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;"><div class="im">On 15/04/2011 2:49 PM, bharat gupta wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
Hi,<br>
<br>
I have done a simulation of 10ns but while viewing the trajectory in VMD I am getting some problems. After loading the .gro and .xtc file VMD stops working .. I used trjconv to compress the file but VMD doesnot read frames from tat file... How can I visualize the trajectories??<br>
</blockquote>
<br></div>
How do you mean "does not read frames from that file"? Can you read an .xtc of one frame?<br>
<br>
Maybe VMD is running out of memory. Use trjconv to reduce the number of frames and try again.<br>
<br>
Mark<br><font color="#888888">
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</font></blockquote></div><br><br clear="all"><br>-- <br>Bharat<br>Ph.D. Candidate<br>Room No. : 7202A, 2nd Floor<br>Biomolecular Engineering Laboratory<br>Division of Chemical Engineering and Polymer Science<br>Pusan National University<br>
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