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On 15/04/2011 3:08 PM, bharat gupta wrote:
<blockquote
cite="mid:BANLkTim=KGz9FAbb0Rhepj7AUnGv1LSNMA@mail.gmail.com"
type="cite">Reduicng no. of frames means breaking the simulation
into smaller frames ... will it affect the result ??<br>
</blockquote>
<br>
You can use trjconv -dt to reduce the number of frames per unit
time, not just chopping into segments. Whether it affects your
result is something only you can answer, because only you know what
you are trying to do.<br>
<br>
Mark<br>
<br>
<blockquote
cite="mid:BANLkTim=KGz9FAbb0Rhepj7AUnGv1LSNMA@mail.gmail.com"
type="cite"><br>
<div class="gmail_quote">On Thu, Apr 14, 2011 at 10:06 PM, Mark
Abraham <span dir="ltr"><<a moz-do-not-send="true"
href="mailto:Mark.Abraham@anu.edu.au">Mark.Abraham@anu.edu.au</a>></span>
wrote:<br>
<blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt
0.8ex; border-left: 1px solid rgb(204, 204, 204);
padding-left: 1ex;">
<div class="im">On 15/04/2011 2:49 PM, bharat gupta wrote:<br>
<blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt
0.8ex; border-left: 1px solid rgb(204, 204, 204);
padding-left: 1ex;">
Hi,<br>
<br>
I have done a simulation of 10ns but while viewing the
trajectory in VMD I am getting some problems. After
loading the .gro and .xtc file VMD stops working .. I used
trjconv to compress the file but VMD doesnot read frames
from tat file... How can I visualize the trajectories??<br>
</blockquote>
<br>
</div>
How do you mean "does not read frames from that file"? Can you
read an .xtc of one frame?<br>
<br>
Maybe VMD is running out of memory. Use trjconv to reduce the
number of frames and try again.<br>
<br>
Mark<br>
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-- <br>
Bharat<br>
Ph.D. Candidate<br>
Room No. : 7202A, 2nd Floor<br>
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Division of Chemical Engineering and Polymer Science<br>
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