I had the issue of shared libraries while installing which I did troubleshoot and the installation went without any errors. I tried converting the pdb file to a new one using editconf and it runs perfectly fine. So, there is some issue with pdb2gmx, which I am not able to detect.<br>
Any hints will be appreciated.<br>Thanks and Regards,<br>Raghu<br><br>Subject: Re: [gmx-users] pdb2gmx segmentation fault<br>
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On 4/20/2011 7:38 AM, Ragothaman Yennamalli wrote:<br>
> Hi,<br>
> I have installed the latest version of gromacs 4.5.4 and the<br>
> installation went fine. When I run pdb2gmx I get Segmentation fault<br>
> even before I could select the force field options. I tried with<br>
> different pdb files and I get seg fault without any other error messages.<br>
> The command is: pdb2gmx -f new.pdb -o conf.gro -p topol.top<br>
<br>
Probably, no other GROMACS command works either, because of some shared<br>
library issue related to your new installation.<br>
<br>
Mark<br>
<br>
<br>
<br clear="all"><br>-- <br>****************************************<br>Ragothaman M Yennamalli, Ph.D.<br>Postdoctoral Research Associate<br>1012 Crop Genome Informatics Laboratory<br>Department of Genetics, Development and Cell Biology<br>
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