<html><head><style type="text/css"><!-- DIV {margin:0px;} --></style></head><body><div style="font-family:'times new roman', 'new york', times, serif;font-size:12pt;color:#000000;"><div style="color: rgb(0, 0, 0); font-family: 'times new roman', 'new york', times, serif; font-size: 12pt; ">Hello dear user,</div><div><font class="Apple-style-span" face="'times new roman', 'new york', times, serif" size="3">after 5ns MD,I used trjconv -f -s -pbc -mol -center -o *.pdb command to get the whole protein without any </font><font class="Apple-style-span" face="'times new roman', 'new york', times, serif">separation</font><font class="Apple-style-span" face="'times new roman', 'new york', times, serif" size="3">,but I found some part of the residue was broken,and some new bond at the end of some residue was formed.I need the intact molecule for docking,but how should I solve this problem.</font></div><div><font class="Apple-style-span"
face="'times new roman', 'new york', times, serif">any advice was appreciate.</font></div><div><font class="Apple-style-span" face="'times new roman', 'new york', times, serif">tanks,</font></div><div style="position: fixed; color: rgb(0, 0, 0); font-family: 'times new roman', 'new york', times, serif; font-size: 12pt; "></div>
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