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On 1/05/2011 11:48 PM, Faezeh Kargar wrote:
<blockquote
cite="mid:28288.85.185.211.70.1304257692.squirrel@mail.iasbs.ac.ir"
type="cite">
<p>Thank you very
much for your reply. could you please tell me if there is any
way to solve
this problem and restart running the code?</p>
</blockquote>
<br>
If my theory is right, keep using the same installation of GROMACS
4.5. Talk to whoever manages your system about what may have
happened. I'm not going to keep re-iterating my guess or predicating
further discussion upon it :-)<br>
<br>
Mark<br>
<br>
<blockquote
cite="mid:28288.85.185.211.70.1304257692.squirrel@mail.iasbs.ac.ir"
type="cite">
<p>Karagr</p>
<br>
<p>>
On 30/04/2011 11:37 PM, Faezeh Kargar wrote:<br>
>><br>
>><br>
>> > On 4/30/2011 7:22 PM, Faezeh Kargar
wrote:<br>
>> >><br>
>> >> Dear gmx users,<br>
>> >><br>
>> >> My code stops running because
of electricity voltage oscillation. it<br>
>> >> happened for
several times and each time I restarted running my code.<br>
>>
>> but for this time with command<br>
>> >><br>
>> >> mdrun -s topol.tpr -x<br>
>> >>
traj.part0002.part0003.part0004.part0004.part0005.xtc -cpi
state.cpt<br>
>> >> -e
ener.part0002.part0003.part0004.part0004.part0005.edr -g<br>
>>
>> md.part0002.part0003.part0004.part0004.part0005.log
&<br>
>> >><br>
>> >> I used this command before
without any error. but now I encountered<br>
>> >> error like
this:<br>
>> >><br>
>> >><br>
>> >>
Program mdrun, VERSION 4.0.7<br>
>> >> Source<br>
>>
>> code file: checkpoint.c, line: 565<br>
>> >><br>
>> >> Fatal error:<br>
>> >> Attempting<br>
>> >> to read a checkpoint file of version 12 with
code of
version 4<br>
>> >><br>
>> >> I looked at the
file "checkpoint.c". at first the version of<br>
>>
>> checkpoint file is 4 but I do not know how and why it
changes.<br>
>> >><br>
>> ><br>
>> > The usual reason
for this kind of error is that you're using an old<br>
>> >
version of GROMACS to access a file written by a new version.
That's<br>
>> not<br>
>> > a good idea.<br>
>> ><br>
>> > Mark<br>
>> ><br>
>><br>
>> Thank
you for your reply. I just use version 4.0.7 of GROMACS and all<br>
>> of files are written by this version. as I said before,
I
could<br>
>> restart running of my codes with this command without
any problem.<br>
>><br>
> <br>
> Version 12 is that used in
4.5.x, so I think you are using that version.<br>
> Someone may have
changed the software and not told you about it (in<br>
> which case,
tell them to stop wasting people's time). Or you've migrated<br>
>
files from one place to another, or something similar.<br>
> <br>
> Mark<br>
> --<br>
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-- <br>
83_kargar</p>
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