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On 6/05/2011 5:22 PM, <a class="moz-txt-link-abbreviated" href="mailto:battistia@libero.it">battistia@libero.it</a> wrote:
<blockquote
cite="mid:22346940.1017291304666576659.JavaMail.defaultUser@defaultHost"
type="cite">
<p style="margin: 0px; padding: 0px;">Dear all,<br>
</p>
<p style="margin: 0px; padding: 0px;"><br>
</p>
<p style="margin: 0px; padding: 0px;">I'm trying install do_dssp
on my pc.</p>
<p style="margin: 0px; padding: 0px;">I followed the steps
indicated in the page:<br>
</p>
<p style="margin: 0px; padding: 0px;"><a class="moz-txt-link-freetext" href="http://lists.gromacs.org/pipermail/gmx-users/2010-November/055728.html">http://lists.gromacs.org/pipermail/gmx-users/2010-November/055728.html</a></p>
<p style="margin: 0px; padding: 0px;"><br>
>> 1.step-root at ab-desktop:/path-dsspcmbi.tar.gz/# tar
xvzf dsspcmbi.tar.gz<br>
>> 2.step-root at
ab-desktop:/path-dsspcmbi.tar.gz/dssp#./DsspCompileGCC<br>
>> 3.step-root at ab-desktop:/path-dsspcmbi.tar.gz/dssp#
cp dsspcmbi dssp<br>
>> 4.step-root at ab-desktop:/path-dsspcmbi.tar.gz/dssp#
mv dssp /usr/local/bin</p>
<p style="margin: 0px; padding: 0px;"><br>
</p>
<p style="margin: 0px; padding: 0px;">and the program work well.</p>
<p style="margin: 0px; padding: 0px;"><br>
</p>
<p style="margin: 0px; padding: 0px;">Now my question:</p>
<p style="margin: 0px; padding: 0px;">How the program use the file
that I downloaded from the web-page:</p>
<p style="margin: 0px; padding: 0px;"><a class="moz-txt-link-freetext" href="http://swift.cmbi.ru.nl/gv/dssp/">http://swift.cmbi.ru.nl/gv/dssp/</a>
using the indicated instruction? </p>
</blockquote>
<br>
GROMACS doesn't. Read the DSSP documentation about what it is
providing.<br>
<br>
<blockquote
cite="mid:22346940.1017291304666576659.JavaMail.defaultUser@defaultHost"
type="cite">
<p style="margin: 0px; padding: 0px;">(I found this page from
<a class="moz-txt-link-freetext" href="http://www.gromacs.org/Developer_Zone/Programming_Guide/DSSP">http://www.gromacs.org/Developer_Zone/Programming_Guide/DSSP</a>)</p>
<p><font><font face="Courier">
<pre>rsync -avz rsync://rsync.cmbi.ru.nl/dssp/ /path_to_dssp/
</pre>
</font></font></p>
<p style="margin: 0px; padding: 0px;">The link
rsync://rsync.cmbi.ru.nl/dssp/ is one of the best <font><i><font
face="Arial"><i>database </i></font></i></font>to
calculate the angle into the secondary structures and so to
define that, isn't it?<br>
</p>
</blockquote>
<br>
One doesn't need a database to calculate angles.<br>
<br>
Mark<br>
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