Hello Tsjerk,<div><br></div><div>Thanks for the reply.</div><div>But if I consider the ions also in the calculation group, then it is not wrong. Right?</div><div><br></div><div>Thanks,</div><div><br></div><div>Anirban</div>
<div><br><div class="gmail_quote">On Sat, May 7, 2011 at 11:59 AM, Tsjerk Wassenaar <span dir="ltr"><<a href="mailto:tsjerkw@gmail.com">tsjerkw@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;">
<p>Hey Anirban,</p>
<p>I would consider the ions part of the solvent. But the procedure is right.</p>
<p>Cheers,</p>
<p>Tsjerk</p>
<p></p><blockquote type="cite"><div><div></div><div class="h5">On May 7, 2011 7:35 AM, "Anirban Ghosh" <<a href="mailto:reach.anirban.ghosh@gmail.com" target="_blank">reach.anirban.ghosh@gmail.com</a>> wrote:<br>
<br>Hi ALL,<div><br></div><div>I want to calculate the SASA of a protein embedded in a bilayer along with water and ions. So while using g_sas I understand that I need to supply all non-solvent atoms as calculation group and Protein as the output group. So I need to make a group with Protein+Lipid+Ions as the calculation group. Right?</div>
<div>Thanks a lot in advance.</div><div><br></div><div>Regards,</div><div><br></div><font color="#888888"><div>Anirban</div>
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