<p>Hey Anirban,</p>
<p>I would consider the ions part of the solvent. But the procedure is right.</p>
<p>Cheers,</p>
<p>Tsjerk</p>
<p><blockquote type="cite">On May 7, 2011 7:35 AM, "Anirban Ghosh" <<a href="mailto:reach.anirban.ghosh@gmail.com">reach.anirban.ghosh@gmail.com</a>> wrote:<br><br>Hi ALL,<div><br></div><div>I want to calculate the SASA of a protein embedded in a bilayer along with water and ions. So while using g_sas I understand that I need to supply all non-solvent atoms as calculation group and Protein as the output group. So I need to make a group with Protein+Lipid+Ions as the calculation group. Right?</div>
<div>Thanks a lot in advance.</div><div><br></div><div>Regards,</div><div><br></div><font color="#888888"><div>Anirban</div>
</font><br>--<br>
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