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Message: 4
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Date: Thu, 26 May 2011 13:15:40 -0400
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From: "Justin A. Lemkul" <jalemkul@vt.edu>
<br />>
Subject: Re: [gmx-users] Re: Error of installing gromacs v4.5.4
<br />>
To: Discussion list for GROMACS users <gmx-users@gromacs.org>
<br />>
Message-ID: <4DDE8ABC.9010108@vt.edu>
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Content-Type: text/plain; charset=UTF-8; format=flowed
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Hsin-Lin Chiang wrote:
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> Hi,
<br />>
>
<br />>
> Thank you for your reply.
<br />>
> I'm not so good in computer.
<br />>
> I think the platform you ask me is "Linux", and kernel is
2.4.21-60.ELsmp
<br />>
> The compiler is gcc v3.2.3 in the machine in my institute.
<br />>
>
<br />>
<br />>
The hardware specs are more significant here.  "cat
/proc/cpuinfo" should
<br />>
provide the necessary information.  The exact configuration command you
used
<br />>
would also be useful.
<br />>
<br />Hi,
<br />
<br />So I think the information you need is
<br />------
<br />processor       : 0
<br />vendor_id       : GenuineIntel
<br />cpu family      : 6
<br />model           : 15
<br />model name      : Intel(R) Xeon(R) CPU            5160  @ 3.00GHz
<br />stepping        : 6
<br />cpu MHz         : 2992.635
<br />cache size      : 4096 KB
<br />physical id     : 0
<br />siblings        : 2
<br />core id         : 0
<br />cpu cores       : 2
<br />runqueue        : 0
<br />fdiv_bug        : no
<br />hlt_bug         : no
<br />f00f_bug        : no
<br />coma_bug        : no
<br />fpu             : yes
<br />fpu_exception   : yes
<br />cpuid level     : 10
<br />wp              : yes
<br />flags           : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm nx lm
<br />bogomips        : 5976.88
<br />-----
<br />
<br />Thank you for your opinion.
<br />I'll ask out technique stuff update our gcc and try to install again.
<br />
<br />Sincerely yours,
<br />Hsin-Lin
<br />The same content in processor 1 2 3
<br />>
Note that gcc 3.2.3 is extremely old, and often times new code will not compile
<br />>
properly with old compilers.  You should upgrade gcc to something more
modern.
<br />>
Surely your system has a package manager that can upgrade such components.
<br />>
<br />>
-Justin
<br />>
<br />>
> Sincerely yours,
<br />>
> Hsin-Lin
<br />>
>  > Message: 1
<br />>
>  > Date: Thu, 26 May 2011 18:03:09 +0200
<br />>
>  > From: Szil?rd P?ll <szilard.pall@cbr.su.se>
<br />>
>  > Subject: Re: [gmx-users] Error of installing gromacs v4.5.4
<br />>
>  > To: Discussion list for GROMACS users
<gmx-users@gromacs.org>
<br />>
>  > Message-ID:
<BANLkTi=9v3+1Dnbjsmd6hna-ayFdpRbTOA@mail.gmail.com>
<br />>
>  > Content-Type: text/plain; charset=ISO-8859-1
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>  >
<br />>
>  > Hi Hsin-Lin,
<br />>
>  >
<br />>
>  > Your problem are caused by a missing header file which is
included by
<br />>
>  > the nobonded SSE kernels which is indicated by the first error
in your
<br />>
>  > output:
<br />>
>  >
<br />>
>  > nb_kernel400_ia32_sse.c:22:23: emmintrin.h: No such file or
directory
<br />>
>  >
<br />>
>  > This header is needed for SSE and SSE2, but for some reason you
don't
<br />>
>  > have it. What platform are you compiling on/for and what
compiler are
<br />>
>  > you using?
<br />>
>  >
<br />>
>  > Alternatively, you can turn off acceleration and you'll be able
to
<br />>
>  > compile the code, but it will run *much* slower than with the
<br />>
>  > accelerated kernels.
<br />>
>  >
<br />>
>  > --
<br />>
>  > Szil嫫d
<br />>
>
<br />>
<br />>
--
<br />>
========================================
<br />>
<br />>
Justin A. Lemkul
<br />>
Ph.D. Candidate
<br />>
ICTAS Doctoral Scholar
<br />>
MILES-IGERT Trainee
<br />>
Department of Biochemistry
<br />>
Virginia Tech
<br />>
Blacksburg, VA
<br />>
jalemkul[at]vt.edu | (540) 231-9080
<br />>
<a target="_blank" href="http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin">http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin</a>
<br />>
<br />>
========================================
<br />>
<br />>
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<br />>
End of gmx-users Digest, Vol 85, Issue 171
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