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Message: 1<br>
Date: Tue, 31 May 2011 06:56:16 -0400<br>
From: "Justin A. Lemkul" <<a href="mailto:jalemkul@vt.edu">jalemkul@vt.edu</a>><br>
Subject: Re: [gmx-users] flexiblity<br>
To: Discussion list for GROMACS users <<a href="mailto:gmx-users@gromacs.org">gmx-users@gromacs.org</a>><br>
Message-ID: <<a href="mailto:4DE4C950.70704@vt.edu">4DE4C950.70704@vt.edu</a>><br>
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shiva birgani wrote:<br>
> Dear all<br>
> I have simulated two different proteins (A and B). I need to compare<br>
> their flexibility. RMSF help to examine their flexibilty individually,<br>
> but I want to campare them with each other.<br>
> Do anybody know a solution to this? Would you please help me in this regard?<br>
><br>
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Is it not just a matter of comparing the RMSF between the two proteins?<br>
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-Justin<br>
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--<br>
========================================<br></blockquote></div>Dear Justin<br><br>Yes I want to compare them, but I am not sure that RMSF is appropriate test to comparison, because two proteins are completely different in their amino acid contents and numbers.<br>
<br>Regards<br>Shiva<br>