Thanks Sir,<br><br>Thanks just now I figured it out!<br><br>With regards<br>kavya<br><br><div class="gmail_quote">On Wed, Jun 1, 2011 at 6:20 PM, Tsjerk Wassenaar <span dir="ltr"><<a href="mailto:tsjerkw@gmail.com">tsjerkw@gmail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;">Hi Kavya,<br>
<br>
Each atom has three coordinates; 3*3740=11220 coordinates, yielding as<br>
many eigenvalues and -vectors.<br>
<br>
Cheers,<br>
<br>
Tsjerk<br>
<div><div></div><div class="h5"><br>
On Wed, Jun 1, 2011 at 2:44 PM, Kavyashree M <<a href="mailto:hmkvsri@gmail.com">hmkvsri@gmail.com</a>> wrote:<br>
> Dear users,<br>
><br>
> I was using g_covar (gmx 4.5.3) to find the eigenvalue and<br>
> eigenvectors. When I used for "protein" which is actually - 3740 in<br>
> number, it gave a total of 11220 eigenvalues, similarly for bacbone,<br>
> c-alpha atoms, the number of eigenvalues given was not matching<br>
> with the number of atoms in question.<br>
> I presume that the number of eigenvalues generated should correspond<br>
> to the number of atoms considered in question.<br>
> But the xpm file generated corresponds with the query given ie., protein,<br>
> C-alpha or backbone as expected.<br>
><br>
> Kindly clarify my doubts.<br>
><br>
> Thank you<br>
> With regards<br>
> M. Kavyashree<br>
><br>
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<br>
<br>
<br>
--<br>
Tsjerk A. Wassenaar, Ph.D.<br>
<br>
post-doctoral researcher<br>
Molecular Dynamics Group<br>
* Groningen Institute for Biomolecular Research and Biotechnology<br>
* Zernike Institute for Advanced Materials<br>
University of Groningen<br>
The Netherlands<br>
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