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On 2/06/2011 5:03 PM, Chandan Choudhury wrote:
<blockquote
cite="mid:BANLkTi=Zgd31F71YkpB7ME0Ge_-Sigp5yA@mail.gmail.com"
type="cite">Hello gmx-users,<br>
<br>
I am trying to install gmx-4.5.4 on a HPC Linux cluster x86_64. <br>
1. I installed fftw 3.2.2<br clear="all">
./configure --prefix /soft/sudip/abc/execs/fftw/
--enable-single --enable-threads<br>
2. Installing Gromacs : CPPFLAGS and LDFLAGS were written in
bashrc file<br>
a) ./configure --prefix=/soft/sudip/abc/execs/gromacs/<br>
execute successfully without any complain.<br>
b) make<br>
/usr/bin/ld:
/soft/sudip/abc/execs/fftw/lib/libfftw3f.a(apiplan.o): relocation
R_X86_64_32 against `a local symbol' can not be used when making a
shared object; recompile with -fPIC<br>
/soft/sudip/abc/execs/fftw/lib/libfftw3f.a: could not
read symbols: Bad value<br>
collect2: ld returned 1 exit status<br>
make[3]: *** [<a moz-do-not-send="true"
href="http://libmd.la">libmd.la</a>] Error 1<br>
make[3]: Leaving directory
`/soft/sudip/abc/untar/gromacs-4.5.4/src/mdlib'<br>
make[2]: *** [all-recursive] Error 1<br>
make[2]: Leaving directory
`/soft/sudip/abc/untar/gromacs-4.5.4/src'<br>
make[1]: *** [all] Error 2<br>
make[1]: Leaving directory
`/soft/sudip/abc/untar/gromacs-4.5.4/src'<br>
make: *** [all-recursive] Error 1<br>
<br>
shows problem. <br>
<br>
Couldnot understand the origin of problem. Kndly let me know if
some information is missing.<br>
</blockquote>
<br>
See <a class="moz-txt-link-freetext" href="http://www.gromacs.org/Downloads/Installation_Instructions">http://www.gromacs.org/Downloads/Installation_Instructions</a>,
where this problem is discussed.<br>
<br>
Mark<br>
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