Thanks everyone. It helped me in installation.<br clear="all"><br>--<br>Chandan kumar Choudhury<br>NCL, Pune<br>INDIA<br>
<br><br><div class="gmail_quote">On Fri, Jun 3, 2011 at 10:36 PM, Joshua L. Phillips <span dir="ltr"><<a href="mailto:jphillips7@ucmerced.edu">jphillips7@ucmerced.edu</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;">
Add --with-pic when configuring fftw.<br>
<br>
-- Josh<br>
<div><div></div><div class="h5"><br>
On Thu, 2011-06-02 at 15:16 +0800, Jianguo Li wrote:<br>
> The error message already shows some hints. Try recompile FFTW with<br>
> -fPIC.<br>
> Jianguo<br>
><br>
><br>
><br>
><br>
> ______________________________________________________________________<br>
> From: Chandan Choudhury <<a href="mailto:iitdckc@gmail.com">iitdckc@gmail.com</a>><br>
> To: gmx-users <<a href="mailto:gmx-users@gromacs.org">gmx-users@gromacs.org</a>><br>
> Sent: Thursday, 2 June 2011 15:03:03<br>
> Subject: [gmx-users] gmx4.5.4 installation help<br>
><br>
> Hello gmx-users,<br>
><br>
> I am trying to install gmx-4.5.4 on a HPC Linux cluster x86_64.<br>
> 1. I installed fftw 3.2.2<br>
> ./configure --prefix /soft/sudip/abc/execs/fftw/<br>
> --enable-single --enable-threads<br>
> 2. Installing Gromacs : CPPFLAGS and LDFLAGS were written in bashrc<br>
> file<br>
> a) ./configure --prefix=/soft/sudip/abc/execs/gromacs/<br>
> execute successfully without any complain.<br>
> b) make<br>
> /usr/bin/ld: /soft/sudip/abc/execs/fftw/lib/libfftw3f.a(apiplan.o): relocation R_X86_64_32 against `a local symbol' can not be used when making a shared object; recompile with -fPIC<br>
> /soft/sudip/abc/execs/fftw/lib/libfftw3f.a: could not<br>
> read symbols: Bad value<br>
> collect2: ld returned 1 exit status<br>
> make[3]: *** [<a href="http://libmd.la" target="_blank">libmd.la</a>] Error 1<br>
> make[3]: Leaving directory<br>
> `/soft/sudip/abc/untar/gromacs-4.5.4/src/mdlib'<br>
> make[2]: *** [all-recursive] Error 1<br>
> make[2]: Leaving directory<br>
> `/soft/sudip/abc/untar/gromacs-4.5.4/src'<br>
> make[1]: *** [all] Error 2<br>
> make[1]: Leaving directory<br>
> `/soft/sudip/abc/untar/gromacs-4.5.4/src'<br>
> make: *** [all-recursive] Error 1<br>
><br>
> shows problem.<br>
><br>
> Couldnot understand the origin of problem. Kndly let me know if some<br>
> information is missing.<br>
><br>
> Chandan<br>
><br>
> --<br>
> Chandan kumar Choudhury<br>
> NCL, Pune<br>
> INDIA<br>
><br>
</div></div>> --<br>
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<br>
--<br>
Joshua L. Phillips<br>
Ph.D. Candidate - School of Engineering<br>
University of California, Merced<br>
<a href="mailto:jphillips7@ucmerced.edu">jphillips7@ucmerced.edu</a><br>
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