Dear all, <br> when i run energy minimization i get the following error.<br><br>the topology file was created from the starting pdb file using g_x2top<br><br><b>grompp -f em.mdp -c out.gro -p carbon.top -o o.tpr -maxwarn 3</b><br>
Atoms in the .top are not numbered consecutively from 1 (rather, atomnr = 348, while at->nr = 0)<br>For more information and tips for troubleshooting, please check the GROMACS<br>website at <a href="http://www.gromacs.org/Documentation/Errors">http://www.gromacs.org/Documentation/Errors</a><br>
<br><br>regrds,<br>sree.<br>