Dear Users, <br><br>Are there any tool for superposing the trajectory <br>structures form MD. Please correct me if I am asking<br>any illogical question.<br>My previous question was regarding the trjconv output<br>pdb trajectory, is there a way to superpose all these <br>
structures?<br><br>Thank you<br>With regards<br>M. Kavyashree <br><br><div class="gmail_quote">On Wed, Jun 22, 2011 at 10:52 PM, Kavyashree M <span dir="ltr"><<a href="mailto:hmkvsri@gmail.com">hmkvsri@gmail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;">Dear users, <br><br> I did ED analysis for one of the trajectories, <br>when I visualised the trajectory along the first<br>
five eigen vectors using g_nmtraj it does not<br>show much movements. It was a simulation of <br>
100 ns.<br>My doubt is when I visualise the trajectory in <br>pymol calculated just after simulation I could <br>observe large movements in certain regions.<br>same regions do have movements in ED<br>trajectory also but not as large as this.<br>
Why is this?<br><br>Thank you<br>With Regards<br><font color="#888888">M. Kavyashree<br><br><br><br>
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