Hello Sir, <br><br>It is not a multimer sir, I was a single chain protein <br>which was intact while submitting to MD. It has no problem<br>when I project the 100ns trajectory on the vector but only <br>in case of half of this time -50ns, it has problem.<br>
<br>Thank you<br>With Regards<br>M.Kavyashree<br><br><div class="gmail_quote">On Sat, Jun 25, 2011 at 1:56 AM, Tsjerk Wassenaar <span dir="ltr"><<a href="mailto:tsjerkw@gmail.com">tsjerkw@gmail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;"><p>Did you make the molecules whole and removed jumps (in case of a multimer) prior to filtering?</p>
<p>Cheers,</p>
<p>Tsjerk</p>
<p></p><blockquote type="cite"><div><div></div><div class="h5">On Jun 24, 2011 8:10 PM, "Kavyashree M" <<a href="mailto:hmkvsri@gmail.com" target="_blank">hmkvsri@gmail.com</a>> wrote:<br><br>Dear user, <br>
<br>When projection of a trajectory (50ns) on an eigen vector<br>
was visualised in pymol, there was broken chains, but when<br>I projected the simulation (continued for 50 more ns ie.,<br>total 100ns) this broken chain was not seen why?<br>
<br>Thanking you<br>With Regards<br><font color="#888888">M. Kavyashree<br>
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