Sir, <br><br>Yes exactly I did the same. I will try with this option now. <br>Thanks.<br><br>With Regards<br>M. Kavyashree<br><br><div class="gmail_quote">On Sat, Jun 25, 2011 at 2:01 AM, Sarath Chandra Dantu <span dir="ltr"><<a href="mailto:dsarath@gwdg.de">dsarath@gwdg.de</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;">I suppose you are writing a extr.pdb form g_anaeig. Try writing down extr.<br>
xtc and load it onto a pdb/gro using vmd. Then it should not be a problem.<br>
<br>
Best Wishes,<br>
<font color="#888888"><br>
Sarath<br>
</font><div><div></div><div class="h5"><br>
> Did you make the molecules whole and removed jumps (in case of a multimer)<br>
> prior to filtering?<br>
><br>
> Cheers,<br>
><br>
> Tsjerk<br>
><br>
> On Jun 24, 2011 8:10 PM, "Kavyashree M" <<a href="mailto:hmkvsri@gmail.com">hmkvsri@gmail.com</a>> wrote:<br>
><br>
> Dear user,<br>
><br>
> When projection of a trajectory (50ns) on an eigen vector<br>
> was visualised in pymol, there was broken chains, but when<br>
> I projected the simulation (continued for 50 more ns ie.,<br>
> total 100ns) this broken chain was not seen why?<br>
><br>
> Thanking you<br>
> With Regards<br>
> M. Kavyashree<br>
><br>
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