<table cellspacing="0" cellpadding="0" border="0" ><tr><td valign="top" style="font: inherit;">Dear justin,<br> Thank you for your previous patient reply<br>When i use <span style="font-weight: bold;"> trjconv tool using -b & -e option</span> i have got the number of intermediate structures. for the selected time interval <br><span style="font-weight: bold;"> i have used the pdb of first and last (obtained throug trjconv) in g_morph tools to get linearly interpolated structure .</span> there also i have got 23 different linearly interpolated structure c<span style="font-weight: bold;">an i compare these two set of pdb</span> (obtained through trjconv and g_morph tools) . <br><span style="font-weight: bold;">will the time factor match ?</span> .because g_morph shows time factor according to
-ninterm flags which is actually different from actual <span style="font-weight: bold;">.trr</span> files obtained through Dynamics. is it possiblie to compare.<br><span style="font-weight: bold;">also g_morph tool does not take ant time as input. .but .xvg file (output) shows time factor.</span> as one of variable<br>I am eagerly expecting your reply.<br>Thanks in advance<br></td></tr></table>