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<DIV>Dear Gromacs users,</DIV>
<DIV> </DIV>
<DIV> I'm want to use Gromacs as the main tool in
my study , since Gromacs is much faster than other MD
packages.</DIV>
<DIV> </DIV>
<DIV> I'm trying to switch from Amber to Gromacs
recently.</DIV>
<DIV> </DIV>
<DIV> The system I test is a RNA , contains
about 2000 atom.</DIV>
<DIV> </DIV>
<DIV> In tleap of Amber , the command is "
solvateoct my_rna TIP3PBOX 10" . Totally 40666 were
added. </DIV>
<DIV> </DIV>
<DIV> In Gromacs, the command is </DIV>
<DIV style="TEXT-INDENT: 2em">"
<DIV>editconf -f nuc.gro -o nuc.box.gro -d 1.0 -bt octahedron -c</DIV>
<DIV>genbox -cp nuc.box.gro -cs spc216.gro -o k_solv.gro -p topol.top</DIV>"</DIV>
<DIV> Totally 62799 waters were added. </DIV>
<DIV> </DIV>
<DIV> </DIV>
<DIV> Is there something wrong with the command I used ?</DIV>
<DIV> </DIV>
<DIV> </DIV>
<DIV>Many thanks for your help !</DIV>
<DIV> </DIV>
<DIV> </DIV>
<DIV>Sincerely,</DIV>
<DIV>Chicago Ji</DIV>
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