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<p id=""><font face="Arial" size="2">Dear Gromacs Users,</font></p>
<p><font face="Arial" size="2"></font> </p>
<p><font face="Arial" size="2">I used PRODRG server in order to obtain the topology file for my molecule (52 atoms with all hydrogens). However, server generated Gromacs topology which involves 47 atoms (for PDB file with polar/aromatic hydrogens). Whether
I will use the pdb file with missing 4 hydrogen that wont be a good apporximation. How to overcome this?</font></p>
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<p><font face="Arial" size="2">Thank you in advance,</font></p>
<p><font face="Arial" size="2"></font> </p>
<p><font face="Arial" size="2">Jan</font></p>
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