I want to calculate secondary structure propensities of residues.<br><br>Following Mark's message on thread <span class="gI"><span class="ik"><img src="images/cleardot.gif" height="16px" width="16px"><br></span>Re: [gmx-users] secondary structure propensities of residues<br>
<br></span><br>I would like to get the release-4.5-patches from git (in order to get do_dssp.c). Nevertheless I found problems while trying to fetch it from git repository due to the proxy. (I followed the advices on <a href="http://www.gromacs.org/Developer_Zone/Git/Git_Tutorial#Git_behind_a_proxy" target="_blank">http://www.gromacs.org/Developer_Zone/Git/Git_Tutorial#Git_behind_a_proxy</a><br>
<br>$ git clone git://<a href="http://git.gromacs.org/gromacs.git" target="_blank">git.gromacs.org/gromacs.git</a><br>Initialized empty Git repository in ~/gromacs/.git/<br>2011/08/09 10:37:46 socat[17264] E CONNECT <a href="http://git.gromacs.org:9418" target="_blank">git.gromacs.org:9418</a>: Forbidden<br>
fatal: The remote end hung up unexpectedly<br><br>I tried the alternative suggested by Roland<br><br>git clone <a href="http://repo.or.cz/r/gromacs.git" target="_blank">http://repo.or.cz/r/gromacs.git</a><br>Initialized empty Git repository in ~/gromacs/.git/<br>
<br>The gromacs directory is created and populated. After this I ran <br><br>$git branch<br>
* master<br>
<br>$git checkout --track -b release-4-5-patches origin/release-4-5-patches<br>fatal: git checkout: updating paths is incompatible with switching branches.<br>Did you intend to checkout 'origin/release-4-5-patches' which can not be resolved as commit?<br>
<br>Is this a problem of the server I am using or is it just a misuse of git? <br><br>Thanks<br><br><br><br><br><br><br><br><br><div class="gmail_quote">2011/3/22 Roland Schulz <span dir="ltr"><<a href="mailto:roland@utk.edu" target="_blank">roland@utk.edu</a>></span><br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">you can clone from <span style="font-family:sans-serif;font-size:13px"><a href="http://repo.or.cz/r/gromacs.git" target="_blank">http://repo.or.cz/r/gromacs.git</a> if you have problems with a proxy.</span><br>
<br><div class="gmail_quote"><div><div></div><div>On Mon, Mar 21, 2011 at 10:54 PM, Alif M Latif <span dir="ltr"><<a href="mailto:prism_dead@yahoo.com" target="_blank">prism_dead@yahoo.com</a>></span> wrote:<br>
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Dear Gromacs Developers,<br><br>Just dropping by to say THANK YOU for v4.5.4, surely is updated version of 4.5.3 with all the bugfixes yes?. I'm having problem getting past my university's proxy server to use git. Now hopefully I can continue my research and solve git problems later..Your hard work is greatly appreciated!<br>
<div> </div>MUHAMMAD ALIF MOHAMMAD LATIF<br>Laboratory of Theoretical and Computational Chemistry<br>Department of Chemistry<br>Faculty of Science<br>Universiti Putra Malaysia<br>43400 UPM Serdang, Selangor<br>MALAYSIA<div>
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