Hi Gromacs Users,<br><br>I am using the gromacs analysing tools to analyze my DCD file produced by NAMD. I set up the VMD_PLUGIN_PATH before running however I got the error that the VMD_PLUGIN_PATH was not set up. Can anyone give me a hand? Please see below the details. Thanks for the help<br>
<br>export VMD_PLUGIN_PATH=/home/pet/vmd/1.9/plugins/molfile<br><br>g_gyrate_d -f protein.dcd -s ../IN/protein.pdb<br><br>############################################<br><br>The file format of protein.dcd is not a known trajectory format to GROMACS.<br>
Please make sure that the file is a trajectory!<br>GROMACS will now assume it to be a trajectory and will try to open it using the VMD plug-ins.<br>This will only work in case the VMD plugins are found and it is a trajectory format supported by VMD.<br>
<br>No VMD Plugins found<br>Set the environment variable VMD_PLUGIN_PATH to the molfile folder within the<br>VMD installation.<br>The architecture (e.g. 32bit versus 64bit) of Gromacs and VMD has to match.<br><br>-------------------------------------------------------<br>
Program g_gyrate_d, VERSION 4.5.3<br>Source code file: trxio.c, line: 867<br><br>Fatal error:<br>Not supported in read_first_frame: protein.dcd<br>For more information and tips for troubleshooting, please check the GROMACS<br>
website at <a href="http://www.gromacs.org/Documentation/Errors">http://www.gromacs.org/Documentation/Errors</a><br>-------------------------------------------------------<br><br>"Lets Kill the Fucking Band" (Tom Savini - From Dusk til Dawn)<br>
<br>############################################<br clear="all"><br>-- <br>Cheers, <br> <br>Paul<br><br><br>