<div>There is similar question in the mail list:</div><a href="http://www.mail-archive.com/gmx-users@gromacs.org/msg41737.html">http://www.mail-archive.com/gmx-users@gromacs.org/msg41737.html</a><div><br></div><div>Regards,</div>
<div>Yuri<br><br><div class="gmail_quote">2011/8/16 גדעון לפידות <span dir="ltr"><<a href="mailto:glapidoth@gmail.com">glapidoth@gmail.com</a>></span><br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;">
<div dir="rtl"><div dir="ltr">Thanks for your replies. </div>
<div dir="ltr">I would like to clarify regarding my first questionn. I don't want a g_dist matrix. I would like to get a covariance matrix where the values correspond to absolute distance and not dived into different dimensions. for example say I have a protein with 100 aa and I run g_covar only on Ca I'll get a 300X300 covariance matrix instead of a 100X100 matrix which is what I want. is there any built in command in Gromacs that will give me this?</div>
<div dir="ltr"> </div>
<div dir="ltr">Thanks,</div>
<div dir="ltr">Gideon<br clear="all"><br></div></div>
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