integrator = steep maximum number of steps to integrate nsteps = 50000 ;Energy minimizing stuff emstep = 0.001 emtol = 100.0 ; OPTIONS FOR BONDS constraints = none ; OUTPUT CONTROL OPTIONS ; Output frequency for coords (x), velocities (v) and forces (f) nstxout = 1000 nstvout = 1000 nstfout = 1000 ; Output frequency and precision for xtc file nstxtcout = 1000 xtc-precision = 1000 ; Energy monitoring energygrps = system ; NEIGHBORSEARCHING PARAMETERS ; nblist update frequency nstlist = 5 ; ns algorithm (simple or grid) ns-type = Grid ; nblist cut-off rlist = 0.8 ; OPTIONS FOR ELECTROSTATICS AND VDW ; Method for doing electrostatics coulombtype = Reaction-Field rcoulomb = 1.4 ; Dielectric constant (DC) for cut-off or DC of reaction field epsilon-rf = 62 ; Method for doing Van der Waals vdw-type = Cut-off ; cut-off lengths rvdw = 1.4 ; Apply long range dispersion corrections for Energy and Pressure DispCorr = No ; Center of mass control nstcomm = 1000 ; Periodic boundary conditions pbc = xyz ; Mode for center of mass motion removal comm-mode = linear ; Groups for center of mass motion removal comm-grps = system