Use g_dist tool.<br><br><div class="gmail_quote">On Sun, Aug 28, 2011 at 8:38 AM, Sajad Ahrari <span dir="ltr"><<a href="mailto:sajadahrari@yahoo.com">sajadahrari@yahoo.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;">
<div><div style="color:#000;background-color:#fff;font-family:arial, helvetica, sans-serif;font-size:12pt"><div style="font-family:arial, helvetica, sans-serif;font-size:12pt">Dear users,</div><div><font face="arial, helvetica, sans-serif" size="3">is there any command in Gromacs to show </font><font face="arial, helvetica, sans-serif">fluctuations</font><font face="arial, helvetica, sans-serif" size="3"> of distance, between mass center for two groups of amino-acids in a protein, over time?</font></div>
<div><font face="arial, helvetica, sans-serif" size="3">thanks, </font></div><div><font face="arial, helvetica, sans-serif" size="3">sajad</font></div></div></div><br>--<br>
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