<html><body><div style="color:#000; background-color:#fff; font-family:times new roman, new york, times, serif;font-size:12pt"><div style="LINE-HEIGHT: normal; MARGIN: 0in 0in 0pt; BACKGROUND: white; RIGHT: auto" class=MsoNormal><SPAN style="FONT-FAMILY: 'Times New Roman','serif'; COLOR: black; FONT-SIZE: 12pt; mso-fareast-font-family: 'Times New Roman'">Dear gromacs users,<BR><BR style="mso-special-character: line-break"></SPAN></div>
<div style="TEXT-ALIGN: justify; LINE-HEIGHT: normal; MARGIN: 0in 0in 0pt; BACKGROUND: white; RIGHT: auto" class=MsoNormal><SPAN style="FONT-FAMILY: 'Times New Roman','serif'; COLOR: black; FONT-SIZE: 12pt; mso-fareast-font-family: 'Times New Roman'">I loaded my .psf and then loaded .pdb file into psf in VMD then used the command “ topo writegmxtop myfile.top” in tk console. I finally generated a gromacs .top file successfully. I want to use gromacs 4.5 tools for trajectory analysis with namd dcd and pdb files. But how can I generate a gromacs tpr file using this .top file ? Can you please give me the information about generating tpr file ? <?xml:namespace prefix = o ns = "urn:schemas-microsoft-com:office:office" /><o:p></o:p></SPAN></div>
<div style="LINE-HEIGHT: normal; MARGIN: 0in 0in 0pt; BACKGROUND: white" class=MsoNormal><SPAN style="FONT-FAMILY: 'Times New Roman','serif'; COLOR: black; FONT-SIZE: 12pt; mso-fareast-font-family: 'Times New Roman'"><o:p> </o:p></SPAN></div>
<div style="LINE-HEIGHT: normal; MARGIN: 0in 0in 0pt; BACKGROUND: white" class=MsoNormal><SPAN style="FONT-FAMILY: 'Times New Roman','serif'; COLOR: black; FONT-SIZE: 12pt; mso-fareast-font-family: 'Times New Roman'">Thanks a lot for your help.<o:p></o:p></SPAN></div>
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