hi Justin,<br><br>As far i referred the OW,HW1 etc are water atoms so how can it be distance between the SOL protein atoms, instead it is SOL water atoms.<br><br>Thanks <br><br><div class="gmail_quote">On Mon, Sep 12, 2011 at 4:49 PM, Justin A. Lemkul <span dir="ltr"><<a href="mailto:jalemkul@vt.edu">jalemkul@vt.edu</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;"><div><div></div><div class="h5"><br>
<br>
aiswarya pawar wrote:<br>
<blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;">
Hi Users,<br>
<br>
Am using g_dist to find the distance between water and protein. but my output has the values of SOL-water distance.<br>
<br>
t: 1 136 SOL 2336 OW 0.772373 (nm)<br>
<br>
</blockquote>
<br></div></div>
This is not a water-water distance, it is the output of the -dist option telling you that water molecule 136 has its OW atom at 0.7723273 nm from whatever your reference group is.<br>
<br>
-Justin<br>
<br>
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Justin A. Lemkul<br>
Ph.D. Candidate<br>
ICTAS Doctoral Scholar<br>
MILES-IGERT Trainee<br>
Department of Biochemistry<br>
Virginia Tech<br>
Blacksburg, VA<br>
jalemkul[at]<a href="http://vt.edu" target="_blank">vt.edu</a> | (540) 231-9080<br>
<a href="http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin" target="_blank">http://www.bevanlab.biochem.<u></u>vt.edu/Pages/Personal/justin</a><br>
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