<br><br><div class="gmail_quote">On Mon, Sep 12, 2011 at 8:35 PM, Mark Abraham <span dir="ltr"><<a href="mailto:Mark.Abraham@anu.edu.au">Mark.Abraham@anu.edu.au</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;">
<div class="im">On 12/09/2011 10:23 PM, lina wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
Hi,<br>
<br>
I am confused, why the job is running,<br>
<br>
but they did not write the .edr, .log .xtc ... files.<br>
<br>
Everything showed so normal, just not writing,<br>
<br>
when I used thread, all is fine, the writing is normal.<br>
<br>
just use mpi, I tried different nodes, still not work, now two hours later, still no writing, just running.<br>
</blockquote>
<br></div>
If you can run mdrun_threads -np 4 and get output and your mpirun -np 4 mdrun_mpi does not write output, then there must be something wrong with your MPI environment. Try another MPI program and see what it does.<br></blockquote>
<div><br>I guess I will drop an email to the administrator. <br><br>might be an MPI issue. <br> <br>Thanks for your time,<br><br></div><blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;">
<font color="#888888">
<br>
Mark</font><div><div></div><div class="h5"><br>
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</div></div></blockquote></div><br><br clear="all"><br>-- <br>Best Regards,<br><br>lina<br><br><br>