<div style="line-height:1.7;color:#000000;font-size:14px;font-family:arial"><div><br><div style="line-height:1.7;color:#000000;font-size:14px;font-family:arial"><div>Hi, everyone:</div><div>when I compiled GMX4.5.5, I encountered a problem and failed many times£¬ SOS!<br><div style="line-height:1.7;color:#000000;font-size:14px;font-family:arial">Below is my config.log:</div><div style="line-height:1.7;color:#000000;font-size:14px;font-family:arial"><br>/usr/bin/uname -p = unknown<br>/bin/uname -X&nbsp;&nbsp;&nbsp;&nbsp; = unknown<br><br>/bin/arch&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; = x86_64<br>/usr/bin/arch -k&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; = unknown<br>/usr/convex/getsysinfo = unknown<br>/usr/bin/hostinfo&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; = unknown<br>/bin/machine&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; = unknown<br>/usr/bin/oslevel&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; = unknown<br>/bin/universe&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; = unknown<br><br>PATH: /usr/lib64/qt-3.3/bin<br>PATH: /usr/local/bin<br>PATH: /usr/bin<br>PATH: /bin<br>PATH: /usr/local/sbin<br>PATH: /usr/sbin<br>PATH: /sbin<br>PATH: /usr/local/grace/bin<br>PATH: /usr/lib64/openmpi/bin<br>PATH: /home/njn/bin<br><br><br>## ----------- ##<br>## Core tests. ##<br>## ----------- ##<br><br>configure:3028: checking build system type<br>configure:3042: result: x86_64-unknown-linux-gnu<br>configure:3062: checking host system type<br>configure:3075: result: x86_64-unknown-linux-gnu<br>configure:3112: checking for a BSD-compatible install<br>configure:3180: result: /usr/bin/install -c<br>configure:3191: checking whether build environment is sane<br>configure:3241: result: yes<br>configure:3382: checking for a thread-safe mkdir -p<br>configure:3421: result: /bin/mkdir -p<br>configure:3434: checking for gawk<br>configure:3450: found /usr/bin/gawk<br>configure:3461: result: gawk<br>configure:3472: checking whether make sets $(MAKE)<br>configure:3494: result: yes<br>configure:3569: checking how to create a ustar tar archive<br>configure:3582: tar --version<br>tar (GNU tar) 1.23<br>Copyright (C) 2010 Free Software Foundation, Inc.<br>License GPLv3+: GNU GPL version 3 or later &lt;http://gnu.org/licenses/gpl.html&gt;.<br>This is free software: you are free to change and redistribute it.<br>There is NO WARRANTY, to the extent permitted by law.<br><br>Written by John Gilmore and Jay Fenlason.<br>configure:3585: $? = 0<br>configure:3625: tardir=conftest.dir &amp;&amp; eval tar --format=ustar -chf - "$tardir" &gt;conftest.tar<br>configure:3628: $? = 0<br>configure:3632: tar -xf - &lt;conftest.tar<br>configure:3635: $? = 0<br>configure:3648: result: gnutar<br>configure:4308: checking for cc<br>configure:4324: found /usr/bin/cc<br>configure:4335: result: cc<br>configure:4366: checking for C compiler version<br>configure:4375: cc --version &gt;&amp;5<br>cc (GCC) 4.4.5 20110214 (Red Hat 4.4.5-6)<br>Copyright (C) 2010 Free Software Foundation, Inc.<br>This is free software; see the source for copying conditions.&nbsp; There is NO<br>warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.<br><br>configure:4386: $? = 0<br>configure:4375: cc -v &gt;&amp;5<br>Using built-in specs.<br>Target: x86_64-redhat-linux<br>Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux<br>Thread model: posix<br>gcc version 4.4.5 20110214 (Red Hat 4.4.5-6) (GCC) <br>configure:4386: $? = 0<br>configure:4375: cc -V &gt;&amp;5<br>cc: '-V' option must have argument<br>configure:4386: $? = 1<br>configure:4375: cc -qversion &gt;&amp;5<br>cc: unrecognized option '-qversion'<br>cc: no input files<br>configure:4386: $? = 1<br>configure:4408: checking for C compiler default output file name<br>configure:4430: cc&nbsp;&nbsp;&nbsp; conftest.c&nbsp; &gt;&amp;5<br>configure:4434: $? = 0<br>configure:4471: result: a.out<br>configure:4487: checking whether the C compiler works<br>configure:4496: ./a.out<br>configure:4500: $? = 0<br>configure:4515: result: yes<br>configure:4522: checking whether we are cross compiling<br>configure:4524: result: no<br>configure:4527: checking for suffix of executables<br>configure:4534: cc -o conftest&nbsp;&nbsp;&nbsp; conftest.c&nbsp; &gt;&amp;5<br>configure:4538: $? = 0<br>configure:4560: result: <br>configure:4566: checking for suffix of object files<br>configure:4588: cc -c&nbsp;&nbsp; conftest.c &gt;&amp;5<br>configure:4592: $? = 0<br>configure:4613: result: o<br>configure:4617: checking whether we are using the GNU C compiler<br>configure:4636: cc -c&nbsp;&nbsp; conftest.c &gt;&amp;5<br>configure:4636: $? = 0<br>configure:4645: result: yes<br>configure:4654: checking whether cc accepts -g<br>configure:4674: cc -c -g&nbsp; conftest.c &gt;&amp;5<br>configure:4674: $? = 0<br>configure:4715: result: yes<br>configure:4732: checking for cc option to accept ISO C89<br>configure:4796: cc&nbsp; -c -g -O2&nbsp; conftest.c &gt;&amp;5<br>configure:4796: $? = 0<br>configure:4809: result: none needed<br>configure:4840: checking for style of include used by make<br>configure:4868: result: GNU<br>configure:4893: checking dependency style of cc<br>configure:5003: result: gcc3<br>configure:5262: checking dependency style of cc<br>configure:5370: result: gcc3<br>configure:6229: checking how to run the C preprocessor<br>configure:6260: cc -E&nbsp; conftest.c<br>configure:6260: $? = 0</div><div style="line-height:1.7;color:#000000;font-size:14px;font-family:arial"><br><strong>configure:6274: cc -E&nbsp; conftest.c<br>conftest.c:19:28: error: ac_nonexistent.h: No such file or directory<br>configure:6274: $? = 1<br>configure: failed program was:<br>| /* confdefs.h */<br>| #define PACKAGE_NAME "gromacs"<br>| #define PACKAGE_TARNAME "gromacs"<br>| #define PACKAGE_VERSION "4.5.5"<br>| #define PACKAGE_STRING "gromacs 4.5.5"<br>| #define PACKAGE_BUGREPORT "<a href="mailto:gmx-users@gromacs.org">gmx-users@gromacs.org</a>"<br>| #define PACKAGE_URL ""<br>| #define PACKAGE "gromacs"<br>| #define VERSION "4.5.5"<br>| #define GMX_SOFTWARE_INVSQRT /**/<br>| #define GMX_QMMM_GAUSSIAN /**/<br>| #define GMX_QMMM_ORCA /**/<br>| #define BUILD_TIME "Wed Sep 21 12:48:07 CST 2011"<br>| #define BUILD_USER "njn@njn-SL"<br>| #define BUILD_MACHINE "Linux 2.6.32-131.0.15.el6.x86_64 x86_64"<br>| #define F77_OR_C_FUNC(name,NAME) name<br>| #define F77_OR_C_FUNC_(name,NAME) name<br>| /* end confdefs.h.&nbsp; */<br>| #include &lt;ac_nonexistent.h&gt;</strong>"'<br><br>## ----------------- ##<br>## Output variables. ##<br>## ----------------- ##<br><br>ACLOCAL='${SHELL} /home/njn/Desktop/gromacs-4.5.5/config/missing --run aclocal-1.11'<br>AMDEPBACKSLASH='\'<br>AMDEP_FALSE='#'<br>AMDEP_TRUE=''<br>AMTAR='${SHELL} /home/njn/Desktop/gromacs-4.5.5/config/missing --run tar'<br>AR='ar'<br>AS='cc '<br>ASFLAGS=' -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -msse2 -funroll-all-loops -std=gnu99'<br>AUTOCONF='${SHELL} /home/njn/Desktop/gromacs-4.5.5/config/missing --run autoconf'<br>AUTOHEADER='${SHELL} /home/njn/Desktop/gromacs-4.5.5/config/missing --run autoheader'<br>AUTOMAKE='${SHELL} /home/njn/Desktop/gromacs-4.5.5/config/missing --run automake-1.11'<br>AWK='gawk'<br>CC='cc '<br>CCAS='cc '<br>CCASDEPMODE='depmode=gcc3'<br>CCASFLAGS=' -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -msse2 -funroll-all-loops -std=gnu99 -pthread -I./include'<br>CCDEPMODE='depmode=gcc3'<br>CC_FOR_BUILD='cc'<br>CFLAGS=' -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -msse2 -funroll-all-loops -std=gnu99 -pthread -I./include'<br>CPP='cc -E'<br>CPPFLAGS=''<br>CXX='g++'<br>CXXCPP='g++ -E'<br>CXXDEPMODE='depmode=gcc3'<br>CXXFLAGS=' -pthread -I./include'<br>CYGPATH_W='echo'<br>DEFS='-DHAVE_CONFIG_H'<br>DEPDIR='.deps'<br>DLLTOOL='dlltool'<br>DLOPEN_LIBS='-ldl'<br>ECHO='echo'<br>ECHO_C=''<br>ECHO_N='-n'<br>ECHO_T=''<br>EGREP='/bin/grep -E'<br>EXEEXT=''<br>F77=''<br>F77LINK='$(LINK)'<br>FFLAGS=''<br>FFT_LIBS='-lfftw3f'<br>FLIBS=''<br>GMX_BLUEGENE_FALSE=''<br>GMX_BLUEGENE_TRUE='#'<br>GMX_DOUBLE_FALSE=''<br>GMX_DOUBLE_TRUE='#'<br>GMX_EXTERNAL_BLAS_FALSE=''<br>GMX_EXTERNAL_BLAS_TRUE='#'<br>GMX_EXTERNAL_LAPACK_FALSE=''<br>GMX_EXTERNAL_LAPACK_TRUE='#'<br>GMX_FAHCORE_FALSE=''<br>GMX_FAHCORE_TRUE='#'<br>GMX_FORTRAN_FALSE=''<br>GMX_FORTRAN_TRUE='#'<br>GMX_IA32_SSE2_FALSE=''<br>GMX_IA32_SSE2_TRUE='#'<br>GMX_IA32_SSE_FALSE=''<br>GMX_IA32_SSE_TRUE='#'<br>GMX_IA64_ASM_FALSE=''<br>GMX_IA64_ASM_TRUE='#'<br>GMX_POWER6_FALSE=''<br>GMX_POWER6_TRUE='#'<br>GMX_PPC_ALTIVEC_FALSE=''<br>GMX_PPC_ALTIVEC_TRUE='#'<br>GMX_SOFTWARE_INVSQRT_FALSE='#'<br>GMX_SOFTWARE_INVSQRT_TRUE=''<br>GMX_X86_64_SSE2_FALSE=''<br>GMX_X86_64_SSE2_TRUE='#'<br>GMX_X86_64_SSE_FALSE='#'<br>GMX_X86_64_SSE_TRUE=''<br>GREP='/bin/grep'<br>GSL_LIBS=''<br>INCLUDES=' -I/usr/include/libxml2'<br>INSTALL_DATA='${INSTALL} -m 644'<br>INSTALL_PROGRAM='${INSTALL}'<br>INSTALL_SCRIPT='${INSTALL}'<br>INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'<br>LDFLAGS='&nbsp; '<br>LIBOBJS=''<br>LIBS='-lnsl -lm&nbsp; '<br>LIBSUFFIX=''<br>LIBTOOL='$(SHELL) $(top_builddir)/libtool'<br>LMKL=''<br>LN_S='ln -s'<br>LTLIBOBJS=''<br>MAKEINFO='${SHELL} /home/njn/Desktop/gromacs-4.5.5/config/missing --run makeinfo'<br>MKDIR_P='/bin/mkdir -p'<br>MPICC=''<br>NO_LA_FILES_FALSE=''<br>NO_LA_FILES_TRUE='#'<br>OBJDUMP='objdump'<br>OBJEXT='o'<br>PACKAGE='gromacs'<br>PACKAGE_BUGREPORT='<a href="mailto:gmx-users@gromacs.org">gmx-users@gromacs.org</a>'<br>PACKAGE_NAME='gromacs'<br>PACKAGE_STRING='gromacs 4.5.5'<br>PACKAGE_TARNAME='gromacs'<br>PACKAGE_URL=''<br>PACKAGE_VERSION='4.5.5'<br>PATH_SEPARATOR=':'<br>PKG_CFLAGS=' -DGMX_SOFTWARE_INVSQRT -DGMX_THREADS'<br>PKG_FFT='fftw3f'<br>PKG_FFT_LIBS=''<br>PKG_GSL=''<br>PKG_XML='libxml-2.0'<br>PTHREAD_CC='cc'<br>PTHREAD_CFLAGS='-pthread'<br>PTHREAD_LIBS=''<br>RANLIB='ranlib'<br>RPM='rpm'<br>SET_MAKE=''<br>SHARED_VERSION_INFO='6:0:0'<br>SHELL='/bin/sh'<br>STRIP='strip'<br>THREAD_PARALLEL_FALSE='#'<br>THREAD_PARALLEL_TRUE=''<br>USE_VERSION_H_FALSE=''<br>USE_VERSION_H_TRUE='#'<br>USE_X11_FALSE='#'<br>USE_X11_TRUE=''<br>VERSION='4.5.5'<br>XMKMF=''<br>XML_LIBS='-lxml2'<br>X_CFLAGS=''<br>X_EXTRA_LIBS=''<br>X_LIBS=''<br>X_PRE_LIBS=' -lSM -lICE'<br>ac_ct_CC='cc'<br>ac_ct_CXX='g++'<br>ac_ct_F77=''<br>am__EXEEXT_FALSE=''<br>am__EXEEXT_TRUE='#'<br>am__fastdepCCAS_FALSE='#'<br>am__fastdepCCAS_TRUE=''<br>am__fastdepCC_FALSE='#'<br>am__fastdepCC_TRUE=''<br>am__fastdepCXX_FALSE='#'<br>am__fastdepCXX_TRUE=''<br>am__include='include'<br>am__isrc=''<br>am__leading_dot='.'<br>am__quote=''<br>am__tar='tar --format=ustar -chf - "$$tardir"'<br>am__untar='tar -xf -'<br>bindir='${exec_prefix}/bin'<br>build='x86_64-unknown-linux-gnu'<br>build_alias=''<br>build_cpu='x86_64'<br>build_os='linux-gnu'<br>build_vendor='unknown'<br>datadir='${datarootdir}'<br>datarootdir='${prefix}/share'<br>docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'<br>dvidir='${docdir}'<br>exec_prefix='${prefix}'<br>have_git=''<br>host='x86_64-unknown-linux-gnu'<br>host_alias=''<br>host_cpu='x86_64'<br>host_os='linux-gnu'<br>host_vendor='unknown'<br>htmldir='${docdir}'<br>includedir='${prefix}/include'<br>infodir='${datarootdir}/info'<br>install_sh='${SHELL} /home/njn/Desktop/gromacs-4.5.5/config/install-sh'<br>libdir='${exec_prefix}/lib'<br>libexecdir='${exec_prefix}/libexec'<br>localedir='${datarootdir}/locale'<br>localstatedir='${prefix}/var'<br>mandir='${datarootdir}/man'<br>mkdir_p='/bin/mkdir -p'<br>oldincludedir='/usr/include'<br>pdfdir='${docdir}'<br>prefix='/home/njn/zms/1gmx4.5.5'<br>program_transform_name='s,x,x,'<br>psdir='${docdir}'<br>sbindir='${exec_prefix}/sbin'<br>sharedstatedir='${prefix}/com'<br>sysconfdir='${prefix}/etc'<br>target_alias=''<br><br>## ----------- ##<br>## confdefs.h. ##<br>## ----------- ##<br><br>/* confdefs.h */<br>#define PACKAGE_NAME "gromacs"<br>#define PACKAGE_TARNAME "gromacs"<br>#define PACKAGE_VERSION "4.5.5"<br>#define PACKAGE_STRING "gromacs 4.5.5"<br>#define PACKAGE_BUGREPORT "<a href="mailto:gmx-users@gromacs.org">gmx-users@gromacs.org</a>"<br>#define PACKAGE_URL ""<br>#define PACKAGE "gromacs"<br>#define VERSION "4.5.5"<br>#define GMX_SOFTWARE_INVSQRT /**/<br>#define GMX_QMMM_GAUSSIAN /**/<br>#define GMX_QMMM_ORCA /**/<br>#define BUILD_TIME "Wed Sep 21 12:48:07 CST 2011"<br>#define BUILD_USER "njn@njn-SL"<br>#define BUILD_MACHINE "Linux 2.6.32-131.0.15.el6.x86_64 x86_64"<br>#define F77_OR_C_FUNC(name,NAME) name<br>#define F77_OR_C_FUNC_(name,NAME) name<br>#define STDC_HEADERS 1<br>#define HAVE_SYS_TYPES_H 1<br>#define HAVE_SYS_STAT_H 1<br>#define HAVE_STDLIB_H 1<br>#define HAVE_STRING_H 1<br>#define HAVE_MEMORY_H 1<br>#define HAVE_STRINGS_H 1<br>#define HAVE_INTTYPES_H 1<br>#define HAVE_STDINT_H 1<br>#define HAVE_UNISTD_H 1<br>#define HAVE_UNISTD_H 1<br>#define HAVE_SYS_TIME_H 1<br>#define HAVE_SCHED_H 1<br>#define HAVE_SYSCONF 1<br>#define HAVE_PTHREAD 1<br>#define THREAD_PTHREADS /**/<br>#define HAVE_PTHREAD_SETAFFINITY 1<br>#define GMX_THREADS /**/<br>#define GMX_MPI /**/<br>#define HAVE_SIGUSR1 /**/<br>#define HAVE_PIPES /**/<br>#define FLOAT_FORMAT_IEEE754 /**/<br>#define HAVE_DLFCN_H 1<br>#define HAVE_FSEEKO 1<br>#define HAVE_LIBM 1<br>#define HAVE_LIBFFTW3F 1<br>#define GMX_FFT_FFTW3 /**/<br>#define HAVE_RPC_RPC_H 1<br>#define HAVE_RPC_XDR_H 1<br>#define HAVE_LIBNSL 1<br>#define HAVE_LIMITS_H 1<br>#define HAVE_UNISTD_H 1<br>#define HAVE_UNISTD_H 1<br>#define HAVE_SYS_TYPES_H 1<br>#define HAVE_SYS_TIME_H 1<br>#define HAVE_DIRENT_H 1<br>#define HAVE_REGEX_H 1<br>#define RETSIGTYPE void<br>#define HAVE_VPRINTF 1<br>#define HAVE_STRCASECMP 1<br>#define HAVE_STRDUP 1<br>#define HAVE_GETTIMEOFDAY 1<br>#define HAVE_CBRT 1<br>#define HAVE_ISNAN 1<br>#define HAVE_FSYNC 1<br>#define HAVE_FILENO 1<br>#define HAVE_POSIX_MEMALIGN 1<br>#define HAVE_MEMALIGN 1<br>#define SIZEOF_INT 4<br>#define SIZEOF_LONG_INT 8<br>#define SIZEOF_LONG_LONG_INT 8<br>#define SIZEOF_OFF_T 8<br>#define SIZEOF_VOIDP 8<br>#define HAVE_LIBXML_PARSER_H 1<br>#define HAVE_LIBXML2 1<br>#define restrict __restrict<br>#define HAVE_UID_T 1<br>#define HAVE_GID_T 1<br>#define HAVE_SIG_ATOMIC_T 1<br>#define GMX_X86_64_SSE /**/<br>#define GMX_DLOPEN /**/<br><br>configure: exit 0<br><br>I'm a rookie, and can't solve it, please help me!!!&nbsp;&nbsp; SOS!<br><br><br><br><div>--<br><div><span class="Apple-style-span" style="font-family: tahoma,verdana,arial,helvetica,sans-serif; font-size: 12px; line-height: normal;">Sincerely yours&nbsp;<br>Dr Ji-Nan Niu&nbsp;<br>School of Materials Science and Engineering.<br>China University of Mining and Technology.<br>Jiangsu Province, XuZhou 221116<br>P. R. China<br></span></div></div><div id="isForwardContent"><div style="line-height: 1.7; color: rgb(0, 0, 0); font-size: 14px; font-family: arial;"><div><div><div><span class="Apple-style-span" style="font-family: tahoma,verdana,arial,helvetica,sans-serif; font-size: 12px; line-height: normal;"><br><br></span></div>        
        
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