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On 21/09/2011 7:27 PM, zhongjin wrote:
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<div><font style="BACKGROUND-COLOR: #cce8cf">Dear GMX
users:</font></div>
<div><font style="BACKGROUND-COLOR: #cce8cf">While I am
installing gmx4.5.5, an error occured after "make"
command :</font></div>
<div>cc -O3 -fomit-frame-pointer -finline-functions -Wall
-Wno-unused -msse2 -funroll-all-loops -std=gnu99
-pthread -I./include -o .libs/grompp grompp.o
-L/home/hzj1000/software/fftw/lib
./.libs/libgmxpreprocess.so
/home/hzj1000/gromacs-4.5.5/src/mdlib/.libs/libmd.so
../mdlib/.libs/libmd.so
/home/hzj1000/gromacs-4.5.5/src/gmxlib/.libs/libgmx.so
../gmxlib/.libs/libgmx.so -ldl -lnsl -lm -Wl,--rpath
-Wl,/home/hzj1000/software/GMX/gromacs4.5.5/lib<br>
/home/hzj1000/gromacs-4.5.5/src/gmxlib/.libs/libgmx.so:
undefined reference to `pthread_setaffinity_np'<br>
collect2: ld returned 1 exit status<br>
make[3]: *** [grompp] Error 1<br>
make[3]: Leaving directory
`/home/hzj1000/gromacs-4.5.5/src/kernel'<br>
make[2]: *** [all-recursive] Error 1<br>
make[2]: Leaving directory
`/home/hzj1000/gromacs-4.5.5/src'<br>
make[1]: *** [all] Error 2<br>
make[1]: Leaving directory
`/home/hzj1000/gromacs-4.5.5/src'</div>
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<br>
This shouldn't happen. What compiler and hardware? configure or
CMake? What command lines?<br>
<br>
Mark<br>
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