<p>Hey :)</p>
<p>If that is what you want, you'll have to turn to programming. But what do you think to gain from it? First get to the bottom of things you can do with gromacs already. Then, if the tools available don't help in answering your question, think of what you'd need to get it done.</p>
<p>Cheers,</p>
<p>Tsjerk</p>
<p><blockquote type="cite">On Oct 4, 2011 12:06 PM, "ahmet yıldırım" <<a href="mailto:ahmedo047@gmail.com">ahmedo047@gmail.com</a>> wrote:<br><br><br>No, it calculates with respect to the positions atom. but I want to calculate the RMSD bonds (A˚ ) and RMSD angles (o).<p>
<font color="#500050">
2011/10/4 Mark Abraham <<a href="mailto:Mark.Abraham@anu.edu.au">Mark.Abraham@anu.edu.au</a>>
>
> On 4/10/2011 7:05 PM, ahmet yıldırım wrote:
>...</font></p><br>--<br>
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