<br>No, it calculates with respect to the positions atom. but I want to calculate the RMSD bonds (A˚ ) and RMSD angles (o).<br><br><div class="gmail_quote">2011/10/4 Mark Abraham <span dir="ltr">&lt;<a href="mailto:Mark.Abraham@anu.edu.au">Mark.Abraham@anu.edu.au</a>&gt;</span><br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;">
  
    
  
  <div bgcolor="#FFFFFF" text="#000000">
    On 4/10/2011 7:05 PM, ahmet yıldırım wrote:
    <blockquote type="cite">any hints? :(<br>
    </blockquote>
    <br>
    You didn&#39;t find something useful in the section titled &quot;Root mean
    square deviations in structure&quot;?<br><font color="#888888">
    <br>
    Mark</font><div><div></div><div class="h5"><br>
    <blockquote type="cite"><br>
      <div class="gmail_quote">03 Ekim 2011 22:32 tarihinde ahmet
        yıldırım <span dir="ltr">&lt;<a href="mailto:ahmedo047@gmail.com" target="_blank">ahmedo047@gmail.com</a>&gt;</span>
        yazdı:<br>
        <blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
          I look at chapter 8 but I didnt found that I want. can you
          give a hint?<br>
          Thanks
          <div>
            <div><br>
              <br>
              <div class="gmail_quote">2011/10/3 Mark Abraham <span dir="ltr">&lt;<a href="mailto:Mark.Abraham@anu.edu.au" target="_blank">Mark.Abraham@anu.edu.au</a>&gt;</span><br>
                <blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
                  <div>On 3/10/2011 10:29 PM, ahmet yıldırım wrote:<br>
                    <blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
                      Dear users,<br>
                      <br>
                      How can I calculate the RMSD bonds (A˚ ) and RMSD
                      angles (o)?<br>
                    </blockquote>
                    <br>
                  </div>
                  Please start your search in chapter 8 of the manual,
                  and consider doing some tutorial material. Someone is
                  likely to have covered some similar procedures.<br>
                  <br>
                  Mark<br>
                  <font color="#888888">
                    -- <br>
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                  </font></blockquote>
              </div>
              <br>
              <br clear="all">
              <br>
            </div>
          </div>
          <font color="#888888">-- <br>
            Ahmet YILDIRIM<br>
          </font></blockquote>
      </div>
      <br>
      <br clear="all">
      <br>
      -- <br>
      Ahmet YILDIRIM<br>
      <br>
      <fieldset></fieldset>
      <br>
    </blockquote>
    <br>
  </div></div></div>

<br>--<br>
gmx-users mailing list    <a href="mailto:gmx-users@gromacs.org">gmx-users@gromacs.org</a><br>
<a href="http://lists.gromacs.org/mailman/listinfo/gmx-users" target="_blank">http://lists.gromacs.org/mailman/listinfo/gmx-users</a><br>
Please search the archive at <a href="http://www.gromacs.org/Support/Mailing_Lists/Search" target="_blank">http://www.gromacs.org/Support/Mailing_Lists/Search</a> before posting!<br>
Please don&#39;t post (un)subscribe requests to the list. Use the<br>
www interface or send it to <a href="mailto:gmx-users-request@gromacs.org">gmx-users-request@gromacs.org</a>.<br>
Can&#39;t post? Read <a href="http://www.gromacs.org/Support/Mailing_Lists" target="_blank">http://www.gromacs.org/Support/Mailing_Lists</a><br></blockquote></div><br><br clear="all"><br>-- <br>Ahmet YILDIRIM<br>