It looks like pdb2gmx does not generate an entrance for cmap terms. I added it manually to the topology file. <br><br><div class="gmail_quote">2011/10/8 César Ávila <span dir="ltr"><<a href="mailto:clavila@gmail.com">clavila@gmail.com</a>></span><br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;">I would like to run REMD simulations on the alanine dipeptide using the Charmm27ff + CMAP. Still, after processing the pdb with pdb2gmx, I do not see any entrance referring to the cmap term in the topology file. Does this mean that Cmap won't be calculated? <br>
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