<br><br><div class="gmail_quote">On Thu, Oct 13, 2011 at 5:16 PM, Ahmad Randy <span dir="ltr"><<a href="mailto:run_d47@yahoo.com">run_d47@yahoo.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;">
<div><div style="color:#000;background-color:#fff;font-family:arial, helvetica, sans-serif;font-size:12pt"><div><div><div style="color:rgb(0, 0, 0);background-color:rgb(255, 255, 255);font-family:arial,helvetica,sans-serif;font-size:12pt">
<div style="font-family:times new roman,new york,times,serif;font-size:12pt">Hi All,<br><br>I understand that there were already some discussions about new DSSP exec with do_dssp in gromacs-4.5.4. I just want to make clear, is it true that this two DSSP and do_dssp do not compatible each other? <br>
<br>I was running in Ubuntu 10.04, and this is what I got:<br><br><span> </span><span> </span><span> </span>do_dssp -f 300K.trr -s 300K.tpr -o dssp<br><br>I choose 5 'Mainchain'<br><br><span> </span><span> </span><span> </span>Fatal error:<br>
<span> </span><span> </span><span> </span>Failed to execute command: /home/madndy/dssp/dssp -na ddkbeHeQ ddvDjL4J > /dev/null 2> /dev/null<br><br><br>I already set the "export DSSP=/home/madndy/dssp/dssp", and also try the latest do_dssp.c (from gromacs-4.6) file for instalation. Still didn't work.<br>
<br>Are there are any suggestion or correction in my step? Or what version of gromacs that work well with DSSP? Or should I get the older version of DSSP that work with do_dssp? And where can I find the older version of DSSP because I can't
find the older version in: <a href="http://swift.cmbi.ru.nl/gv/dssp/" target="_blank">http://swift.cmbi.ru.nl/gv/dssp/</a> . <br></div></div></div></div></div></div></blockquote><div> </div><div><a href="http://biskit.pasteur.fr/install/applications/dssp">http://biskit.pasteur.fr/install/applications/dssp</a><br>
<br>You may click above link (untested, be careful).<br><br></div><blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;"><div><div style="color: rgb(0, 0, 0); background-color: rgb(255, 255, 255); font-family: arial,helvetica,sans-serif; font-size: 12pt;">
<div><div><div style="color: rgb(0, 0, 0); background-color: rgb(255, 255, 255); font-family: arial,helvetica,sans-serif; font-size: 12pt;"><div style="font-family: times new roman,new york,times,serif; font-size: 12pt;">
<br>Thanx,<br><font color="#888888">Randy<br><span></span></font></div></div></div></div></div></div><br>--<br>
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