1 check with the rtp files in your forcefield, especially the parameters<div>2 check with the imput pdb file, the format matters a lot.</div><div><br><br><div class="gmail_quote">On Wed, Oct 19, 2011 at 8:18 AM, <span dir="ltr"><<a href="mailto:aiswarya.pawar@gmail.com">aiswarya.pawar@gmail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;">Hi Users,<br>
<br>
I performed a simple minimization for a protein complex in vacuum. Didn't get any error while performing the minimization but when visualised the pdb file after the minimization the chains of the protein complex separated.<br>
<br>
What could be the reason.<br>
<br>
Thanks,<br>
Aiswarya<br>
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