Hi,<br><br>All the parameters are ok, still i get the complex separated.<br><br><br><div class="gmail_quote">On Wed, Oct 19, 2011 at 7:02 PM, Justin A. Lemkul <span dir="ltr"><<a href="mailto:jalemkul@vt.edu">jalemkul@vt.edu</a>></span> wrote:<br>
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<br>
<a href="mailto:aiswarya.pawar@gmail.com" target="_blank">aiswarya.pawar@gmail.com</a> wrote:<br>
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Hi Users,<br>
<br>
I performed a simple minimization for a protein complex in vacuum. Didn't get any error while performing the minimization but when visualised the pdb file after the minimization the chains of the protein complex separated.<br>
<br>
What could be the reason.<br>
<br>
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Please see FAQ #3 under the heading:<br>
<br>
<a href="http://www.gromacs.org/Documentation/FAQs#Analysis_and_Visualization" target="_blank">http://www.gromacs.org/<u></u>Documentation/FAQs#Analysis_<u></u>and_Visualization</a><br>
<br>
-Justin<div class="im"><br>
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Thanks,<br>
Aiswarya Sent from my BlackBerry® on Reliance Mobile, India's No. 1 Network. Go for it!<br>
<br>
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Justin A. Lemkul<br>
Ph.D. Candidate<br>
ICTAS Doctoral Scholar<br>
MILES-IGERT Trainee<br>
Department of Biochemistry<br>
Virginia Tech<br>
Blacksburg, VA<br>
jalemkul[at]<a href="http://vt.edu" target="_blank">vt.edu</a> | (540) 231-9080<br>
<a href="http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin" target="_blank">http://www.bevanlab.biochem.<u></u>vt.edu/Pages/Personal/justin</a><br>
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