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On 20/10/2011 4:14 PM, aiswarya pawar wrote:
<blockquote
cite="mid:CAEa6cRA8RiTHOqyvwUMcny+=C07rr4V9mXsfagrP=OW_goAAoA@mail.gmail.com"
type="cite">Hi,<br>
<br>
All the parameters are ok, still i get the complex separated.<br>
</blockquote>
<br>
Simulation parameters have nothing to do with the phenomena in the
FAQ Justin pointed out to you. Please read it.<br>
<br>
Mark<br>
<br>
<blockquote
cite="mid:CAEa6cRA8RiTHOqyvwUMcny+=C07rr4V9mXsfagrP=OW_goAAoA@mail.gmail.com"
type="cite"><br>
<br>
<div class="gmail_quote">On Wed, Oct 19, 2011 at 7:02 PM, Justin
A. Lemkul <span dir="ltr"><<a moz-do-not-send="true"
href="mailto:jalemkul@vt.edu">jalemkul@vt.edu</a>></span>
wrote:<br>
<blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt
0.8ex; border-left: 1px solid rgb(204, 204, 204);
padding-left: 1ex;">
<div class="im"><br>
<br>
<a moz-do-not-send="true"
href="mailto:aiswarya.pawar@gmail.com" target="_blank">aiswarya.pawar@gmail.com</a>
wrote:<br>
<blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt
0.8ex; border-left: 1px solid rgb(204, 204, 204);
padding-left: 1ex;">
Hi Users,<br>
<br>
I performed a simple minimization for a protein complex in
vacuum. Didn't get any error while performing the
minimization but when visualised the pdb file after the
minimization the chains of the protein complex separated.<br>
<br>
What could be the reason.<br>
<br>
</blockquote>
<br>
</div>
Please see FAQ #3 under the heading:<br>
<br>
<a moz-do-not-send="true"
href="http://www.gromacs.org/Documentation/FAQs#Analysis_and_Visualization"
target="_blank">http://www.gromacs.org/Documentation/FAQs#Analysis_and_Visualization</a><br>
<br>
-Justin
<div class="im"><br>
<br>
<blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt
0.8ex; border-left: 1px solid rgb(204, 204, 204);
padding-left: 1ex;">
Thanks,<br>
Aiswarya Sent from my BlackBerry® on Reliance Mobile,
India's No. 1 Network. Go for it!<br>
<br>
</blockquote>
<br>
</div>
-- <br>
========================================<br>
<br>
Justin A. Lemkul<br>
Ph.D. Candidate<br>
ICTAS Doctoral Scholar<br>
MILES-IGERT Trainee<br>
Department of Biochemistry<br>
Virginia Tech<br>
Blacksburg, VA<br>
jalemkul[at]<a moz-do-not-send="true" href="http://vt.edu"
target="_blank">vt.edu</a> | (540) 231-9080<br>
<a moz-do-not-send="true"
href="http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin"
target="_blank">http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin</a><br>
<br>
========================================<br>
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