<br>This was due to that in .gro file corresponded to the end of productive MD I've found this <a href="http://i1209.photobucket.com/albums/cc394/own11/mdL.png">http://i1209.photobucket.com/albums/cc394/own11/mdL.png</a><br>
It's looks like the protein moved out from box so I've thought that some error occured during stimulation<br><br><div class="gmail_quote"><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
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I don't understand this statement. You should also note that a periodic box has no "outside." Perhaps it would be useful to post images online. If you choose to do so, please follow bullet point #4 here:<br>
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-Justin<br>
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==============================<u></u>==========<br>
<br>
Justin A. Lemkul<br>
Ph.D. Candidate<br>
ICTAS Doctoral Scholar<br>
MILES-IGERT Trainee<br>
Department of Biochemistry<br>
Virginia Tech<br>
Blacksburg, VA<br>
jalemkul[at]<a href="http://vt.edu" target="_blank">vt.edu</a> | (540) 231-9080<br>
<a href="http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin" target="_blank">http://www.bevanlab.biochem.<u></u>vt.edu/Pages/Personal/justin</a><br>
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