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<DIV><FONT size=2>Dear Szilárd，</FONT></DIV>
<DIV> </DIV>
<DIV>Thank you very much. I removed -xHOST from CFLAGS and FFLAGS, and now it
runs correctly.</DIV>
<DIV>As for Intel Compile 2011 sp1 + openmpi on my cluster,
mpif90 and mpicc give "segmentation fault" error message.</DIV>
<DIV> <FONT size=2> </DIV>
<DIV></FONT>Best regards,</DIV>
<DIV> </DIV>
<DIV>Ye </DIV>
<DIV>2011-10-25 </DIV>
<DIV>
<HR color=#b5c4df SIZE=1>
</DIV>
<DIV><FONT size=2><STRONG>From：</STRONG> Szil醨d P醠l </FONT></DIV>
<DIV><FONT size=2><STRONG>Date：</STRONG> 2011-10-25 03:42:17 </FONT></DIV>
<DIV><FONT size=2><STRONG>To：</STRONG> Discussion list for GROMACS users
</FONT></DIV>
<DIV><FONT size=2><STRONG>CC：</STRONG> </FONT></DIV>
<DIV><FONT size=2><STRONG>Subject：</STRONG> Re: [gmx-users] failure during
compiling gromacs 4.5.5 </FONT></DIV>
<DIV><FONT size=2></FONT> </DIV>
<DIV><FONT size=2>
<DIV>Hi,</DIV>
<DIV></DIV>
<DIV>The error messages are all referring to SSE 4.1 packed integer min/max</DIV>
<DIV>operations not being recognized. I assume that these were enabled by</DIV>
<DIV>the "-xHOST" compiler option, and icc automatically generated these</DIV>
<DIV>instructions - the files it's complaining about are even temporary</DIV>
<DIV>files.</DIV>
<DIV></DIV>
<DIV>Could it be that you have a broken installation of Intel Compilers on</DIV>
<DIV>your cluster? You could check if it works if you remove -xHOST or</DIV>
<DIV>explicitly state -xSSE4.1.</DIV>
<DIV></DIV>
<DIV>Just for curiosity, what are the issues with the Intel Compiler 2011</DIV>
<DIV>(I assume that's 12.x) + OpenMPI?</DIV>
<DIV></DIV>
<DIV>Cheers,</DIV>
<DIV>--</DIV>
<DIV>Szilárd</DIV>
<DIV></DIV>
<DIV></DIV>
<DIV></DIV>
<DIV>On Mon, Oct 24, 2011 at 4:53 PM, Ye MEI <ymei@itcs.ecnu.edu.cn> wrote:</DIV>
<DIV>> Dear Gromacs users,</DIV>
<DIV>></DIV>
<DIV>> I am trying to install gromacs on my cluster using Intel Compiler 11.1.072</DIV>
<DIV>> and FFTW3. But I met the following error message</DIV>
<DIV>> icc -DHAVE_CONFIG_H -I. -I../../../src -I/usr/include/libxml2 -I../../../include -I/usr/local/include -xHOST -I/home/users/ymei/software/fftw3/intel/include -pthread -I./include -MT type.lo -MD -MP -MF .deps/type.Tpo -c type.c -o type.o</DIV>
<DIV>> /tmp/iccLPSVQqas_.s: Assembler messages:</DIV>
<DIV>> /tmp/iccLPSVQqas_.s:92: Error: no such instruction: `pmaxsb %xmm0,%xmm1'</DIV>
<DIV>> /tmp/iccLPSVQqas_.s:100: Error: no such instruction: `pmaxsb (%r8,%rdx),%xmm0'</DIV>
<DIV>> /tmp/iccLPSVQqas_.s:228: Error: no such instruction: `pminsb %xmm0,%xmm1'</DIV>
<DIV>> /tmp/iccLPSVQqas_.s:236: Error: no such instruction: `pminsb (%r8,%rdx),%xmm0'</DIV>
<DIV>> /tmp/iccLPSVQqas_.s:2559: Error: no such instruction: `pmaxsd %xmm0,%xmm1'</DIV>
<DIV>> /tmp/iccLPSVQqas_.s:2567: Error: no such instruction: `pmaxsd (%rdx,%r9,4),%xmm0'</DIV>
<DIV>> /tmp/iccLPSVQqas_.s:2709: Error: no such instruction: `pminsd %xmm0,%xmm1'</DIV>
<DIV>> /tmp/iccLPSVQqas_.s:2717: Error: no such instruction: `pminsd (%rdx,%r9,4),%xmm0'</DIV>
<DIV>> /tmp/iccLPSVQqas_.s:2989: Error: no such instruction: `pmulld %xmm0,%xmm1'</DIV>
<DIV>> /tmp/iccLPSVQqas_.s:2997: Error: no such instruction: `pmulld (%rdx,%rax,4),%xmm0'</DIV>
<DIV>> /tmp/iccLPSVQqas_.s:7009: Error: no such instruction: `pmaxsb %xmm0,%xmm1'</DIV>
<DIV>> /tmp/iccLPSVQqas_.s:7017: Error: no such instruction: `pmaxsb (%r8,%rdx),%xmm0'</DIV>
<DIV>> /tmp/iccLPSVQqas_.s:7145: Error: no such instruction: `pminsb %xmm0,%xmm1'</DIV>
<DIV>> /tmp/iccLPSVQqas_.s:7153: Error: no such instruction: `pminsb (%r8,%rdx),%xmm0'</DIV>
<DIV>> /tmp/iccLPSVQqas_.s:9313: Error: no such instruction: `pmaxuw %xmm0,%xmm1'</DIV>
<DIV>> /tmp/iccLPSVQqas_.s:9321: Error: no such instruction: `pmaxuw (%rdx,%r9,2),%xmm0'</DIV>
<DIV>> /tmp/iccLPSVQqas_.s:9463: Error: no such instruction: `pminuw %xmm0,%xmm1'</DIV>
<DIV>> /tmp/iccLPSVQqas_.s:9471: Error: no such instruction: `pminuw (%rdx,%r9,2),%xmm0'</DIV>
<DIV>> /tmp/iccLPSVQqas_.s:10621: Error: no such instruction: `pmaxud %xmm0,%xmm1'</DIV>
<DIV>> /tmp/iccLPSVQqas_.s:10629: Error: no such instruction: `pmaxud (%rdx,%r9,4),%xmm0'</DIV>
<DIV>> /tmp/iccLPSVQqas_.s:10771: Error: no such instruction: `pminud %xmm0,%xmm1'</DIV>
<DIV>> /tmp/iccLPSVQqas_.s:10779: Error: no such instruction: `pminud (%rdx,%r9,4),%xmm0'</DIV>
<DIV>> /tmp/iccLPSVQqas_.s:11051: Error: no such instruction: `pmulld %xmm0,%xmm1'</DIV>
<DIV>> /tmp/iccLPSVQqas_.s:11059: Error: no such instruction: `pmulld (%rdx,%rax,4),%xmm0'</DIV>
<DIV>> /tmp/iccLPSVQqas_.s:15514: Error: no such instruction: `pmaxsb %xmm0,%xmm1'</DIV>
<DIV>> /tmp/iccLPSVQqas_.s:15522: Error: no such instruction: `pmaxsb (%r8,%rdx),%xmm0'</DIV>
<DIV>> /tmp/iccLPSVQqas_.s:15650: Error: no such instruction: `pminsb %xmm0,%xmm1'</DIV>
<DIV>> /tmp/iccLPSVQqas_.s:15658: Error: no such instruction: `pminsb (%r8,%rdx),%xmm0'</DIV>
<DIV>> make[4]: *** [type.lo] Error 1</DIV>
<DIV>> make[4]: Leaving directory `/home/users/ymei/software/gromacs-4.5.5/src/gmxlib/thread_mpi'</DIV>
<DIV>> make[3]: *** [all-recursive] Error 1</DIV>
<DIV>> make[3]: Leaving directory `/home/users/ymei/software/gromacs-4.5.5/src/gmxlib'</DIV>
<DIV>> make[2]: *** [all-recursive] Error 1</DIV>
<DIV>> make[2]: Leaving directory `/home/users/ymei/software/gromacs-4.5.5/src'</DIV>
<DIV>> make[1]: *** [all] Error 2</DIV>
<DIV>> make[1]: Leaving directory `/home/users/ymei/software/gromacs-4.5.5/src'</DIV>
<DIV>> make: *** [all-recursive] Error 1</DIV>
<DIV>></DIV>
<DIV>> I have never seen this kind of error message before, and I donot know what</DIV>
<DIV>> to do to solve this problem. Can anyone help me out?</DIV>
<DIV>> Intel Compiler 2011 is ok. But this version does not work well with my</DIV>
<DIV>> cluster, especially with openmpi.</DIV>
<DIV>></DIV>
<DIV>> And the following information might be helpful.</DIV>
<DIV>></DIV>
<DIV>> ymei@CLOUD@ECNU:~/software/gromacs-4.5.5> gcc -v</DIV>
<DIV>> Using built-in specs.</DIV>
<DIV>> Target: x86_64-suse-linux</DIV>
<DIV>> Configured with: ../configure --enable-threads=posix --prefix=/usr --with-local-prefix=/usr/local --infodir=/usr/share/info --mandir=/usr/share/man --libdir=/usr/lib64 --libexecdir=/usr/lib64 --enable-languages=c,c++,objc,fortran,obj-c++,java,ada --enable-checking=release --with-gxx-include-dir=/usr/include/c++/4.1.2 --enable-ssp --disable-libssp --disable-libgcj --with-slibdir=/lib64 --with-system-zlib --enable-shared --enable-__cxa_atexit --enable-libstdcxx-allocator=new --program-suffix= --enable-version-specific-runtime-libs --without-system-libunwind --with-cpu=generic --host=x86_64-suse-linux</DIV>
<DIV>> Thread model: posix</DIV>
<DIV>> gcc version 4.1.2 20070115 (SUSE Linux)</DIV>
<DIV>></DIV>
<DIV>> ymei@CLOUD@ECNU:~/software/gromacs-4.5.5> cat /etc/SuSE-release</DIV>
<DIV>> SUSE Linux Enterprise Server 10 (x86_64)</DIV>
<DIV>> VERSION = 10</DIV>
<DIV>> PATCHLEVEL = 2</DIV>
<DIV>></DIV>
<DIV>> Thank you in advance.</DIV>
<DIV>></DIV>
<DIV>> Ye</DIV>
<DIV>> --</DIV>
<DIV>> gmx-users mailing list gmx-users@gromacs.org</DIV>
<DIV>> http://lists.gromacs.org/mailman/listinfo/gmx-users</DIV>
<DIV>> Please search the archive at</DIV>
<DIV>> http://www.gromacs.org/Support/Mailing_Lists/Search before posting!</DIV>
<DIV>> Please don't post (un)subscribe requests to the list. Use the</DIV>
<DIV>> www interface or send it to gmx-users-request@gromacs.org.</DIV>
<DIV>> Can't post? Read http://www.gromacs.org/Support/Mailing_Lists</DIV>
<DIV>></DIV>
<DIV>-- </DIV>
<DIV>gmx-users mailing list gmx-users@gromacs.org</DIV>
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