Dear Gromacs Users!<br><br>I wounder to know about possible algorithm of preparation of the existing lipid bilayer for further simulation.<br>E.g I have some pre-equilibrated bilayer consisted of symmetrical lipid organization. Now I'd like to remove some lipids from the edges of my bilayer to reduce overall ammounts lipids but dont perturb symmetry of the system. Then I'd like to place this bilayer to the rombic box ( corresponded to the organzation of the new bilayer system).<br>
How I could to realise such operation of the lipid removing ?<br><br>In addition I'd like to check Area per lipid value during that removing. How this could be done?<br><br>James<br>