I have seen different articles on MD simulation in vaccum but i didn't get the exact way for it.If u can tell me the exact way then i can proceed for it fastly because I have to do it within certain time limit.<br><br>
<div class="gmail_quote">On Thu, Nov 3, 2011 at 11:43 PM, Mark Abraham <span dir="ltr"><<a href="mailto:Mark.Abraham@anu.edu.au">Mark.Abraham@anu.edu.au</a>></span> wrote:<br>
<blockquote style="BORDER-LEFT: #ccc 1px solid; MARGIN: 0px 0px 0px 0.8ex; PADDING-LEFT: 1ex" class="gmail_quote">
<div class="im">On 4/11/2011 4:58 AM, Anushree Tripathi wrote:<br>
<blockquote style="BORDER-LEFT: #ccc 1px solid; MARGIN: 0px 0px 0px 0.8ex; PADDING-LEFT: 1ex" class="gmail_quote">Let me know how to simulate a membrane protein in vaccum medium by using gromacs commands.What are the basic differences in commands as well as parameters used in liquid and vaccum medium? Please guide me.<br>
</blockquote><br></div>I suggest you do all the GROMACS tutorial material you can find, and supplement that with reading several published articles that do simulations with objectives similar to yours.<br><br>Mark<br><font color="#888888">-- <br>
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